mirror of https://github.com/ANL-CEEESA/LLEPE
titusquah
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# Sphinx build info version 1
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<title>Overview: module code — reeps 1.0.0 documentation</title>
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<a href="../index.html" class="icon icon-home"> reeps
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<p class="caption"><span class="caption-text">User Guide</span></p>
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<ul>
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<li class="toctree-l1"><a class="reference internal" href="../guide/install.html">Installation</a></li>
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<li class="toctree-l1"><a class="reference internal" href="../guide/quickstart.html">Getting Started</a></li>
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</ul>
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<p class="caption"><span class="caption-text">Searchers</span></p>
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<ul>
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<li class="toctree-l1"><a class="reference internal" href="../modules/reeps.html">REEPS</a></li>
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<li><a href="../index.html">Docs</a> »</li>
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<li>Overview: module code</li>
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<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
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<div itemprop="articleBody">
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<h1>All modules for which code is available</h1>
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<ul><li><a href="reeps/reeps.html">reeps.reeps</a></li>
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© Copyright 2020, Titus Quah, Nwike Iloeje
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Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>.
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.. _install:
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************
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Installation
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************
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Prerequisites
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=============
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REEPS requires python3 (>=3.5) with the development headers.
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Stable Release
|
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==============
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There is currently no stable release
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Bleeding-edge version
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=====================
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To install the latest master version:
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.. code-block:: bash
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pip install git+https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git
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Development version
|
||||
===================
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To contribute to Stable-Baselines, with support for running tests and building the documentation.
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.. code-block:: bash
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git clone https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git && cd parameter-estimation
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pip install -e .[docs,tests]
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Using Docker Images
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===================
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Not set up yet.
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.. _quickstart:
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***************
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Getting Started
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***************
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Here is a quick example of how to fit an xml thermodynamic model to experimental data.
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This code fits Nd standard enthalpy in the "twophase.xml" cantera file to the
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experimental data in "Nd_exp_data.csv".
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The code then produces a parity plot of the measured and predicted concentrations of Nd 3+ in the
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aqueous phase.
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.. code-block:: python
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from reeps import REEPS
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searcher_parameters = {'exp_csv_filename': 'Nd_exp_data.csv',
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'phases_xml_filename': 'twophase.xml',
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'opt_dict': {'Nd(H(A)2)3(org)': {'h0': -4.7e6}},
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'phase_names': ['HCl_electrolyte', 'PC88A_liquid'],
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'aq_solvent_name': 'H2O(L)',
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'extractant_name': '(HA)2(org)',
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'diluant_name': 'dodecane',
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'complex_names': ['Nd(H(A)2)3(org)'],
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'rare_earth_ion_names': ['Nd+++'],
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'aq_solvent_rho': 1000.0,
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'extractant_rho': 960.0,
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'diluant_rho': 750.0}
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searcher = REEPS(**searcher_parameters)
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est_enthalpy = searcher.fit()
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searcher.update_xml(est_enthalpy)
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searcher.parity_plot(print_r_squared=True)
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The code should return something like this
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@ -0,0 +1,39 @@
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.. reeps documentation master file, created by Titus Quah
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sphinx-quickstart on Tue Jun 9 10:13:23 2020.
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You can adapt this file completely to your liking, but it should at least
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contain the root `toctree` directive.
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Welcome to reeps's docs! - the Rare earth element parameter searcher
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====================================================================
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REEPS is a package for thermodynamic parameter estimation specifically
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for rare earth element extraction modeling.
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REEPS takes experimental data in a csv and system data in a xml.
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The package then uses Cantera, another python package, to simulate equilibrium.
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Error between predicted and experimental data is then minimized.
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.. toctree::
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:maxdepth: 2
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:caption: User Guide
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guide/install
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guide/quickstart
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.. toctree::
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:maxdepth: 1
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:caption: Searchers
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modules/reeps
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Indices and tables
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==================
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* :ref:`genindex`
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* :ref:`modindex`
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* :ref:`search`
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.. _reeps:
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.. automodule:: reeps
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REEPS
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=====
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Parameters
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----------
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.. autoclass:: REEPS
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:members:
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:inherited-members:
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|
||||
padding: 0 4px;
|
||||
text-decoration: none;
|
||||
}
|
||||
|
||||
a.headerlink:hover {
|
||||
color: #444;
|
||||
background: #EAEAEA;
|
||||
}
|
||||
|
||||
div.body p, div.body dd, div.body li {
|
||||
line-height: 1.4em;
|
||||
}
|
||||
|
||||
div.admonition {
|
||||
margin: 20px 0px;
|
||||
padding: 10px 30px;
|
||||
background-color: #EEE;
|
||||
border: 1px solid #CCC;
|
||||
}
|
||||
|
||||
div.admonition tt.xref, div.admonition code.xref, div.admonition a tt {
|
||||
background-color: #FBFBFB;
|
||||
border-bottom: 1px solid #fafafa;
|
||||
}
|
||||
|
||||
div.admonition p.admonition-title {
|
||||
font-family: Georgia, serif;
|
||||
font-weight: normal;
|
||||
font-size: 24px;
|
||||
margin: 0 0 10px 0;
|
||||
padding: 0;
|
||||
line-height: 1;
|
||||
}
|
||||
|
||||
div.admonition p.last {
|
||||
margin-bottom: 0;
|
||||
}
|
||||
|
||||
div.highlight {
|
||||
background-color: #fff;
|
||||
}
|
||||
|
||||
dt:target, .highlight {
|
||||
background: #FAF3E8;
|
||||
}
|
||||
|
||||
div.warning {
|
||||
background-color: #FCC;
|
||||
border: 1px solid #FAA;
|
||||
}
|
||||
|
||||
div.danger {
|
||||
background-color: #FCC;
|
||||
border: 1px solid #FAA;
|
||||
-moz-box-shadow: 2px 2px 4px #D52C2C;
|
||||
-webkit-box-shadow: 2px 2px 4px #D52C2C;
|
||||
box-shadow: 2px 2px 4px #D52C2C;
|
||||
}
|
||||
|
||||
div.error {
|
||||
background-color: #FCC;
|
||||
border: 1px solid #FAA;
|
||||
-moz-box-shadow: 2px 2px 4px #D52C2C;
|
||||
-webkit-box-shadow: 2px 2px 4px #D52C2C;
|
||||
box-shadow: 2px 2px 4px #D52C2C;
|
||||
}
|
||||
|
||||
div.caution {
|
||||
background-color: #FCC;
|
||||
border: 1px solid #FAA;
|
||||
}
|
||||
|
||||
div.attention {
|
||||
background-color: #FCC;
|
||||
border: 1px solid #FAA;
|
||||
}
|
||||
|
||||
div.important {
|
||||
background-color: #EEE;
|
||||
border: 1px solid #CCC;
|
||||
}
|
||||
|
||||
div.note {
|
||||
background-color: #EEE;
|
||||
border: 1px solid #CCC;
|
||||
}
|
||||
|
||||
div.tip {
|
||||
background-color: #EEE;
|
||||
border: 1px solid #CCC;
|
||||
}
|
||||
|
||||
div.hint {
|
||||
background-color: #EEE;
|
||||
border: 1px solid #CCC;
|
||||
}
|
||||
|
||||
div.seealso {
|
||||
background-color: #EEE;
|
||||
border: 1px solid #CCC;
|
||||
}
|
||||
|
||||
div.topic {
|
||||
background-color: #EEE;
|
||||
}
|
||||
|
||||
p.admonition-title {
|
||||
display: inline;
|
||||
}
|
||||
|
||||
p.admonition-title:after {
|
||||
content: ":";
|
||||
}
|
||||
|
||||
pre, tt, code {
|
||||
font-family: 'Consolas', 'Menlo', 'DejaVu Sans Mono', 'Bitstream Vera Sans Mono', monospace;
|
||||
font-size: 0.9em;
|
||||
}
|
||||
|
||||
.hll {
|
||||
background-color: #FFC;
|
||||
margin: 0 -12px;
|
||||
padding: 0 12px;
|
||||
display: block;
|
||||
}
|
||||
|
||||
img.screenshot {
|
||||
}
|
||||
|
||||
tt.descname, tt.descclassname, code.descname, code.descclassname {
|
||||
font-size: 0.95em;
|
||||
}
|
||||
|
||||
tt.descname, code.descname {
|
||||
padding-right: 0.08em;
|
||||
}
|
||||
|
||||
img.screenshot {
|
||||
-moz-box-shadow: 2px 2px 4px #EEE;
|
||||
-webkit-box-shadow: 2px 2px 4px #EEE;
|
||||
box-shadow: 2px 2px 4px #EEE;
|
||||
}
|
||||
|
||||
table.docutils {
|
||||
border: 1px solid #888;
|
||||
-moz-box-shadow: 2px 2px 4px #EEE;
|
||||
-webkit-box-shadow: 2px 2px 4px #EEE;
|
||||
box-shadow: 2px 2px 4px #EEE;
|
||||
}
|
||||
|
||||
table.docutils td, table.docutils th {
|
||||
border: 1px solid #888;
|
||||
padding: 0.25em 0.7em;
|
||||
}
|
||||
|
||||
table.field-list, table.footnote {
|
||||
border: none;
|
||||
-moz-box-shadow: none;
|
||||
-webkit-box-shadow: none;
|
||||
box-shadow: none;
|
||||
}
|
||||
|
||||
table.footnote {
|
||||
margin: 15px 0;
|
||||
width: 100%;
|
||||
border: 1px solid #EEE;
|
||||
background: #FDFDFD;
|
||||
font-size: 0.9em;
|
||||
}
|
||||
|
||||
table.footnote + table.footnote {
|
||||
margin-top: -15px;
|
||||
border-top: none;
|
||||
}
|
||||
|
||||
table.field-list th {
|
||||
padding: 0 0.8em 0 0;
|
||||
}
|
||||
|
||||
table.field-list td {
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
table.field-list p {
|
||||
margin-bottom: 0.8em;
|
||||
}
|
||||
|
||||
/* Cloned from
|
||||
* https://github.com/sphinx-doc/sphinx/commit/ef60dbfce09286b20b7385333d63a60321784e68
|
||||
*/
|
||||
.field-name {
|
||||
-moz-hyphens: manual;
|
||||
-ms-hyphens: manual;
|
||||
-webkit-hyphens: manual;
|
||||
hyphens: manual;
|
||||
}
|
||||
|
||||
table.footnote td.label {
|
||||
width: .1px;
|
||||
padding: 0.3em 0 0.3em 0.5em;
|
||||
}
|
||||
|
||||
table.footnote td {
|
||||
padding: 0.3em 0.5em;
|
||||
}
|
||||
|
||||
dl {
|
||||
margin: 0;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
dl dd {
|
||||
margin-left: 30px;
|
||||
}
|
||||
|
||||
blockquote {
|
||||
margin: 0 0 0 30px;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
ul, ol {
|
||||
/* Matches the 30px from the narrow-screen "li > ul" selector below */
|
||||
margin: 10px 0 10px 30px;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
pre {
|
||||
background: #EEE;
|
||||
padding: 7px 30px;
|
||||
margin: 15px 0px;
|
||||
line-height: 1.3em;
|
||||
}
|
||||
|
||||
div.viewcode-block:target {
|
||||
background: #ffd;
|
||||
}
|
||||
|
||||
dl pre, blockquote pre, li pre {
|
||||
margin-left: 0;
|
||||
padding-left: 30px;
|
||||
}
|
||||
|
||||
tt, code {
|
||||
background-color: #ecf0f3;
|
||||
color: #222;
|
||||
/* padding: 1px 2px; */
|
||||
}
|
||||
|
||||
tt.xref, code.xref, a tt {
|
||||
background-color: #FBFBFB;
|
||||
border-bottom: 1px solid #fff;
|
||||
}
|
||||
|
||||
a.reference {
|
||||
text-decoration: none;
|
||||
border-bottom: 1px dotted #004B6B;
|
||||
}
|
||||
|
||||
/* Don't put an underline on images */
|
||||
a.image-reference, a.image-reference:hover {
|
||||
border-bottom: none;
|
||||
}
|
||||
|
||||
a.reference:hover {
|
||||
border-bottom: 1px solid #6D4100;
|
||||
}
|
||||
|
||||
a.footnote-reference {
|
||||
text-decoration: none;
|
||||
font-size: 0.7em;
|
||||
vertical-align: top;
|
||||
border-bottom: 1px dotted #004B6B;
|
||||
}
|
||||
|
||||
a.footnote-reference:hover {
|
||||
border-bottom: 1px solid #6D4100;
|
||||
}
|
||||
|
||||
a:hover tt, a:hover code {
|
||||
background: #EEE;
|
||||
}
|
||||
|
||||
|
||||
@media screen and (max-width: 870px) {
|
||||
|
||||
div.sphinxsidebar {
|
||||
display: none;
|
||||
}
|
||||
|
||||
div.document {
|
||||
width: 100%;
|
||||
|
||||
}
|
||||
|
||||
div.documentwrapper {
|
||||
margin-left: 0;
|
||||
margin-top: 0;
|
||||
margin-right: 0;
|
||||
margin-bottom: 0;
|
||||
}
|
||||
|
||||
div.bodywrapper {
|
||||
margin-top: 0;
|
||||
margin-right: 0;
|
||||
margin-bottom: 0;
|
||||
margin-left: 0;
|
||||
}
|
||||
|
||||
ul {
|
||||
margin-left: 0;
|
||||
}
|
||||
|
||||
li > ul {
|
||||
/* Matches the 30px from the "ul, ol" selector above */
|
||||
margin-left: 30px;
|
||||
}
|
||||
|
||||
.document {
|
||||
width: auto;
|
||||
}
|
||||
|
||||
.footer {
|
||||
width: auto;
|
||||
}
|
||||
|
||||
.bodywrapper {
|
||||
margin: 0;
|
||||
}
|
||||
|
||||
.footer {
|
||||
width: auto;
|
||||
}
|
||||
|
||||
.github {
|
||||
display: none;
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
@media screen and (max-width: 875px) {
|
||||
|
||||
body {
|
||||
margin: 0;
|
||||
padding: 20px 30px;
|
||||
}
|
||||
|
||||
div.documentwrapper {
|
||||
float: none;
|
||||
background: #fff;
|
||||
}
|
||||
|
||||
div.sphinxsidebar {
|
||||
display: block;
|
||||
float: none;
|
||||
width: 102.5%;
|
||||
margin: 50px -30px -20px -30px;
|
||||
padding: 10px 20px;
|
||||
background: #333;
|
||||
color: #FFF;
|
||||
}
|
||||
|
||||
div.sphinxsidebar h3, div.sphinxsidebar h4, div.sphinxsidebar p,
|
||||
div.sphinxsidebar h3 a {
|
||||
color: #fff;
|
||||
}
|
||||
|
||||
div.sphinxsidebar a {
|
||||
color: #AAA;
|
||||
}
|
||||
|
||||
div.sphinxsidebar p.logo {
|
||||
display: none;
|
||||
}
|
||||
|
||||
div.document {
|
||||
width: 100%;
|
||||
margin: 0;
|
||||
}
|
||||
|
||||
div.footer {
|
||||
display: none;
|
||||
}
|
||||
|
||||
div.bodywrapper {
|
||||
margin: 0;
|
||||
}
|
||||
|
||||
div.body {
|
||||
min-height: 0;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
.rtd_doc_footer {
|
||||
display: none;
|
||||
}
|
||||
|
||||
.document {
|
||||
width: auto;
|
||||
}
|
||||
|
||||
.footer {
|
||||
width: auto;
|
||||
}
|
||||
|
||||
.footer {
|
||||
width: auto;
|
||||
}
|
||||
|
||||
.github {
|
||||
display: none;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/* misc. */
|
||||
|
||||
.revsys-inline {
|
||||
display: none!important;
|
||||
}
|
||||
|
||||
/* Make nested-list/multi-paragraph items look better in Releases changelog
|
||||
* pages. Without this, docutils' magical list fuckery causes inconsistent
|
||||
* formatting between different release sub-lists.
|
||||
*/
|
||||
div#changelog > div.section > ul > li > p:only-child {
|
||||
margin-bottom: 0;
|
||||
}
|
||||
|
||||
/* Hide fugly table cell borders in ..bibliography:: directive output */
|
||||
table.docutils.citation, table.docutils.citation td, table.docutils.citation th {
|
||||
border: none;
|
||||
/* Below needed in some edge cases; if not applied, bottom shadows appear */
|
||||
-moz-box-shadow: none;
|
||||
-webkit-box-shadow: none;
|
||||
box-shadow: none;
|
||||
}
|
||||
|
||||
|
||||
/* relbar */
|
||||
|
||||
.related {
|
||||
line-height: 30px;
|
||||
width: 100%;
|
||||
font-size: 0.9rem;
|
||||
}
|
||||
|
||||
.related.top {
|
||||
border-bottom: 1px solid #EEE;
|
||||
margin-bottom: 20px;
|
||||
}
|
||||
|
||||
.related.bottom {
|
||||
border-top: 1px solid #EEE;
|
||||
}
|
||||
|
||||
.related ul {
|
||||
padding: 0;
|
||||
margin: 0;
|
||||
list-style: none;
|
||||
}
|
||||
|
||||
.related li {
|
||||
display: inline;
|
||||
}
|
||||
|
||||
nav#rellinks {
|
||||
float: right;
|
||||
}
|
||||
|
||||
nav#rellinks li+li:before {
|
||||
content: "|";
|
||||
}
|
||||
|
||||
nav#breadcrumbs li+li:before {
|
||||
content: "\00BB";
|
||||
}
|
||||
|
||||
/* Hide certain items when printing */
|
||||
@media print {
|
||||
div.related {
|
||||
display: none;
|
||||
}
|
||||
}
|
||||
@ -0,0 +1,768 @@
|
||||
/*
|
||||
* basic.css
|
||||
* ~~~~~~~~~
|
||||
*
|
||||
* Sphinx stylesheet -- basic theme.
|
||||
*
|
||||
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
|
||||
* :license: BSD, see LICENSE for details.
|
||||
*
|
||||
*/
|
||||
|
||||
/* -- main layout ----------------------------------------------------------- */
|
||||
|
||||
div.clearer {
|
||||
clear: both;
|
||||
}
|
||||
|
||||
/* -- relbar ---------------------------------------------------------------- */
|
||||
|
||||
div.related {
|
||||
width: 100%;
|
||||
font-size: 90%;
|
||||
}
|
||||
|
||||
div.related h3 {
|
||||
display: none;
|
||||
}
|
||||
|
||||
div.related ul {
|
||||
margin: 0;
|
||||
padding: 0 0 0 10px;
|
||||
list-style: none;
|
||||
}
|
||||
|
||||
div.related li {
|
||||
display: inline;
|
||||
}
|
||||
|
||||
div.related li.right {
|
||||
float: right;
|
||||
margin-right: 5px;
|
||||
}
|
||||
|
||||
/* -- sidebar --------------------------------------------------------------- */
|
||||
|
||||
div.sphinxsidebarwrapper {
|
||||
padding: 10px 5px 0 10px;
|
||||
}
|
||||
|
||||
div.sphinxsidebar {
|
||||
float: left;
|
||||
width: 230px;
|
||||
margin-left: -100%;
|
||||
font-size: 90%;
|
||||
word-wrap: break-word;
|
||||
overflow-wrap : break-word;
|
||||
}
|
||||
|
||||
div.sphinxsidebar ul {
|
||||
list-style: none;
|
||||
}
|
||||
|
||||
div.sphinxsidebar ul ul,
|
||||
div.sphinxsidebar ul.want-points {
|
||||
margin-left: 20px;
|
||||
list-style: square;
|
||||
}
|
||||
|
||||
div.sphinxsidebar ul ul {
|
||||
margin-top: 0;
|
||||
margin-bottom: 0;
|
||||
}
|
||||
|
||||
div.sphinxsidebar form {
|
||||
margin-top: 10px;
|
||||
}
|
||||
|
||||
div.sphinxsidebar input {
|
||||
border: 1px solid #98dbcc;
|
||||
font-family: sans-serif;
|
||||
font-size: 1em;
|
||||
}
|
||||
|
||||
div.sphinxsidebar #searchbox form.search {
|
||||
overflow: hidden;
|
||||
}
|
||||
|
||||
div.sphinxsidebar #searchbox input[type="text"] {
|
||||
float: left;
|
||||
width: 80%;
|
||||
padding: 0.25em;
|
||||
box-sizing: border-box;
|
||||
}
|
||||
|
||||
div.sphinxsidebar #searchbox input[type="submit"] {
|
||||
float: left;
|
||||
width: 20%;
|
||||
border-left: none;
|
||||
padding: 0.25em;
|
||||
box-sizing: border-box;
|
||||
}
|
||||
|
||||
|
||||
img {
|
||||
border: 0;
|
||||
max-width: 100%;
|
||||
}
|
||||
|
||||
/* -- search page ----------------------------------------------------------- */
|
||||
|
||||
ul.search {
|
||||
margin: 10px 0 0 20px;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
ul.search li {
|
||||
padding: 5px 0 5px 20px;
|
||||
background-image: url(file.png);
|
||||
background-repeat: no-repeat;
|
||||
background-position: 0 7px;
|
||||
}
|
||||
|
||||
ul.search li a {
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
ul.search li div.context {
|
||||
color: #888;
|
||||
margin: 2px 0 0 30px;
|
||||
text-align: left;
|
||||
}
|
||||
|
||||
ul.keywordmatches li.goodmatch a {
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
/* -- index page ------------------------------------------------------------ */
|
||||
|
||||
table.contentstable {
|
||||
width: 90%;
|
||||
margin-left: auto;
|
||||
margin-right: auto;
|
||||
}
|
||||
|
||||
table.contentstable p.biglink {
|
||||
line-height: 150%;
|
||||
}
|
||||
|
||||
a.biglink {
|
||||
font-size: 1.3em;
|
||||
}
|
||||
|
||||
span.linkdescr {
|
||||
font-style: italic;
|
||||
padding-top: 5px;
|
||||
font-size: 90%;
|
||||
}
|
||||
|
||||
/* -- general index --------------------------------------------------------- */
|
||||
|
||||
table.indextable {
|
||||
width: 100%;
|
||||
}
|
||||
|
||||
table.indextable td {
|
||||
text-align: left;
|
||||
vertical-align: top;
|
||||
}
|
||||
|
||||
table.indextable ul {
|
||||
margin-top: 0;
|
||||
margin-bottom: 0;
|
||||
list-style-type: none;
|
||||
}
|
||||
|
||||
table.indextable > tbody > tr > td > ul {
|
||||
padding-left: 0em;
|
||||
}
|
||||
|
||||
table.indextable tr.pcap {
|
||||
height: 10px;
|
||||
}
|
||||
|
||||
table.indextable tr.cap {
|
||||
margin-top: 10px;
|
||||
background-color: #f2f2f2;
|
||||
}
|
||||
|
||||
img.toggler {
|
||||
margin-right: 3px;
|
||||
margin-top: 3px;
|
||||
cursor: pointer;
|
||||
}
|
||||
|
||||
div.modindex-jumpbox {
|
||||
border-top: 1px solid #ddd;
|
||||
border-bottom: 1px solid #ddd;
|
||||
margin: 1em 0 1em 0;
|
||||
padding: 0.4em;
|
||||
}
|
||||
|
||||
div.genindex-jumpbox {
|
||||
border-top: 1px solid #ddd;
|
||||
border-bottom: 1px solid #ddd;
|
||||
margin: 1em 0 1em 0;
|
||||
padding: 0.4em;
|
||||
}
|
||||
|
||||
/* -- domain module index --------------------------------------------------- */
|
||||
|
||||
table.modindextable td {
|
||||
padding: 2px;
|
||||
border-collapse: collapse;
|
||||
}
|
||||
|
||||
/* -- general body styles --------------------------------------------------- */
|
||||
|
||||
div.body {
|
||||
min-width: 450px;
|
||||
max-width: 800px;
|
||||
}
|
||||
|
||||
div.body p, div.body dd, div.body li, div.body blockquote {
|
||||
-moz-hyphens: auto;
|
||||
-ms-hyphens: auto;
|
||||
-webkit-hyphens: auto;
|
||||
hyphens: auto;
|
||||
}
|
||||
|
||||
a.headerlink {
|
||||
visibility: hidden;
|
||||
}
|
||||
|
||||
a.brackets:before,
|
||||
span.brackets > a:before{
|
||||
content: "[";
|
||||
}
|
||||
|
||||
a.brackets:after,
|
||||
span.brackets > a:after {
|
||||
content: "]";
|
||||
}
|
||||
|
||||
h1:hover > a.headerlink,
|
||||
h2:hover > a.headerlink,
|
||||
h3:hover > a.headerlink,
|
||||
h4:hover > a.headerlink,
|
||||
h5:hover > a.headerlink,
|
||||
h6:hover > a.headerlink,
|
||||
dt:hover > a.headerlink,
|
||||
caption:hover > a.headerlink,
|
||||
p.caption:hover > a.headerlink,
|
||||
div.code-block-caption:hover > a.headerlink {
|
||||
visibility: visible;
|
||||
}
|
||||
|
||||
div.body p.caption {
|
||||
text-align: inherit;
|
||||
}
|
||||
|
||||
div.body td {
|
||||
text-align: left;
|
||||
}
|
||||
|
||||
.first {
|
||||
margin-top: 0 !important;
|
||||
}
|
||||
|
||||
p.rubric {
|
||||
margin-top: 30px;
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
img.align-left, .figure.align-left, object.align-left {
|
||||
clear: left;
|
||||
float: left;
|
||||
margin-right: 1em;
|
||||
}
|
||||
|
||||
img.align-right, .figure.align-right, object.align-right {
|
||||
clear: right;
|
||||
float: right;
|
||||
margin-left: 1em;
|
||||
}
|
||||
|
||||
img.align-center, .figure.align-center, object.align-center {
|
||||
display: block;
|
||||
margin-left: auto;
|
||||
margin-right: auto;
|
||||
}
|
||||
|
||||
img.align-default, .figure.align-default {
|
||||
display: block;
|
||||
margin-left: auto;
|
||||
margin-right: auto;
|
||||
}
|
||||
|
||||
.align-left {
|
||||
text-align: left;
|
||||
}
|
||||
|
||||
.align-center {
|
||||
text-align: center;
|
||||
}
|
||||
|
||||
.align-default {
|
||||
text-align: center;
|
||||
}
|
||||
|
||||
.align-right {
|
||||
text-align: right;
|
||||
}
|
||||
|
||||
/* -- sidebars -------------------------------------------------------------- */
|
||||
|
||||
div.sidebar {
|
||||
margin: 0 0 0.5em 1em;
|
||||
border: 1px solid #ddb;
|
||||
padding: 7px 7px 0 7px;
|
||||
background-color: #ffe;
|
||||
width: 40%;
|
||||
float: right;
|
||||
}
|
||||
|
||||
p.sidebar-title {
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
/* -- topics ---------------------------------------------------------------- */
|
||||
|
||||
div.topic {
|
||||
border: 1px solid #ccc;
|
||||
padding: 7px 7px 0 7px;
|
||||
margin: 10px 0 10px 0;
|
||||
}
|
||||
|
||||
p.topic-title {
|
||||
font-size: 1.1em;
|
||||
font-weight: bold;
|
||||
margin-top: 10px;
|
||||
}
|
||||
|
||||
/* -- admonitions ----------------------------------------------------------- */
|
||||
|
||||
div.admonition {
|
||||
margin-top: 10px;
|
||||
margin-bottom: 10px;
|
||||
padding: 7px;
|
||||
}
|
||||
|
||||
div.admonition dt {
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
div.admonition dl {
|
||||
margin-bottom: 0;
|
||||
}
|
||||
|
||||
p.admonition-title {
|
||||
margin: 0px 10px 5px 0px;
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
div.body p.centered {
|
||||
text-align: center;
|
||||
margin-top: 25px;
|
||||
}
|
||||
|
||||
/* -- tables ---------------------------------------------------------------- */
|
||||
|
||||
table.docutils {
|
||||
border: 0;
|
||||
border-collapse: collapse;
|
||||
}
|
||||
|
||||
table.align-center {
|
||||
margin-left: auto;
|
||||
margin-right: auto;
|
||||
}
|
||||
|
||||
table.align-default {
|
||||
margin-left: auto;
|
||||
margin-right: auto;
|
||||
}
|
||||
|
||||
table caption span.caption-number {
|
||||
font-style: italic;
|
||||
}
|
||||
|
||||
table caption span.caption-text {
|
||||
}
|
||||
|
||||
table.docutils td, table.docutils th {
|
||||
padding: 1px 8px 1px 5px;
|
||||
border-top: 0;
|
||||
border-left: 0;
|
||||
border-right: 0;
|
||||
border-bottom: 1px solid #aaa;
|
||||
}
|
||||
|
||||
table.footnote td, table.footnote th {
|
||||
border: 0 !important;
|
||||
}
|
||||
|
||||
th {
|
||||
text-align: left;
|
||||
padding-right: 5px;
|
||||
}
|
||||
|
||||
table.citation {
|
||||
border-left: solid 1px gray;
|
||||
margin-left: 1px;
|
||||
}
|
||||
|
||||
table.citation td {
|
||||
border-bottom: none;
|
||||
}
|
||||
|
||||
th > p:first-child,
|
||||
td > p:first-child {
|
||||
margin-top: 0px;
|
||||
}
|
||||
|
||||
th > p:last-child,
|
||||
td > p:last-child {
|
||||
margin-bottom: 0px;
|
||||
}
|
||||
|
||||
/* -- figures --------------------------------------------------------------- */
|
||||
|
||||
div.figure {
|
||||
margin: 0.5em;
|
||||
padding: 0.5em;
|
||||
}
|
||||
|
||||
div.figure p.caption {
|
||||
padding: 0.3em;
|
||||
}
|
||||
|
||||
div.figure p.caption span.caption-number {
|
||||
font-style: italic;
|
||||
}
|
||||
|
||||
div.figure p.caption span.caption-text {
|
||||
}
|
||||
|
||||
/* -- field list styles ----------------------------------------------------- */
|
||||
|
||||
table.field-list td, table.field-list th {
|
||||
border: 0 !important;
|
||||
}
|
||||
|
||||
.field-list ul {
|
||||
margin: 0;
|
||||
padding-left: 1em;
|
||||
}
|
||||
|
||||
.field-list p {
|
||||
margin: 0;
|
||||
}
|
||||
|
||||
.field-name {
|
||||
-moz-hyphens: manual;
|
||||
-ms-hyphens: manual;
|
||||
-webkit-hyphens: manual;
|
||||
hyphens: manual;
|
||||
}
|
||||
|
||||
/* -- hlist styles ---------------------------------------------------------- */
|
||||
|
||||
table.hlist td {
|
||||
vertical-align: top;
|
||||
}
|
||||
|
||||
|
||||
/* -- other body styles ----------------------------------------------------- */
|
||||
|
||||
ol.arabic {
|
||||
list-style: decimal;
|
||||
}
|
||||
|
||||
ol.loweralpha {
|
||||
list-style: lower-alpha;
|
||||
}
|
||||
|
||||
ol.upperalpha {
|
||||
list-style: upper-alpha;
|
||||
}
|
||||
|
||||
ol.lowerroman {
|
||||
list-style: lower-roman;
|
||||
}
|
||||
|
||||
ol.upperroman {
|
||||
list-style: upper-roman;
|
||||
}
|
||||
|
||||
li > p:first-child {
|
||||
margin-top: 0px;
|
||||
}
|
||||
|
||||
li > p:last-child {
|
||||
margin-bottom: 0px;
|
||||
}
|
||||
|
||||
dl.footnote > dt,
|
||||
dl.citation > dt {
|
||||
float: left;
|
||||
}
|
||||
|
||||
dl.footnote > dd,
|
||||
dl.citation > dd {
|
||||
margin-bottom: 0em;
|
||||
}
|
||||
|
||||
dl.footnote > dd:after,
|
||||
dl.citation > dd:after {
|
||||
content: "";
|
||||
clear: both;
|
||||
}
|
||||
|
||||
dl.field-list {
|
||||
display: grid;
|
||||
grid-template-columns: fit-content(30%) auto;
|
||||
}
|
||||
|
||||
dl.field-list > dt {
|
||||
font-weight: bold;
|
||||
word-break: break-word;
|
||||
padding-left: 0.5em;
|
||||
padding-right: 5px;
|
||||
}
|
||||
|
||||
dl.field-list > dt:after {
|
||||
content: ":";
|
||||
}
|
||||
|
||||
dl.field-list > dd {
|
||||
padding-left: 0.5em;
|
||||
margin-top: 0em;
|
||||
margin-left: 0em;
|
||||
margin-bottom: 0em;
|
||||
}
|
||||
|
||||
dl {
|
||||
margin-bottom: 15px;
|
||||
}
|
||||
|
||||
dd > p:first-child {
|
||||
margin-top: 0px;
|
||||
}
|
||||
|
||||
dd ul, dd table {
|
||||
margin-bottom: 10px;
|
||||
}
|
||||
|
||||
dd {
|
||||
margin-top: 3px;
|
||||
margin-bottom: 10px;
|
||||
margin-left: 30px;
|
||||
}
|
||||
|
||||
dt:target, span.highlighted {
|
||||
background-color: #fbe54e;
|
||||
}
|
||||
|
||||
rect.highlighted {
|
||||
fill: #fbe54e;
|
||||
}
|
||||
|
||||
dl.glossary dt {
|
||||
font-weight: bold;
|
||||
font-size: 1.1em;
|
||||
}
|
||||
|
||||
.optional {
|
||||
font-size: 1.3em;
|
||||
}
|
||||
|
||||
.sig-paren {
|
||||
font-size: larger;
|
||||
}
|
||||
|
||||
.versionmodified {
|
||||
font-style: italic;
|
||||
}
|
||||
|
||||
.system-message {
|
||||
background-color: #fda;
|
||||
padding: 5px;
|
||||
border: 3px solid red;
|
||||
}
|
||||
|
||||
.footnote:target {
|
||||
background-color: #ffa;
|
||||
}
|
||||
|
||||
.line-block {
|
||||
display: block;
|
||||
margin-top: 1em;
|
||||
margin-bottom: 1em;
|
||||
}
|
||||
|
||||
.line-block .line-block {
|
||||
margin-top: 0;
|
||||
margin-bottom: 0;
|
||||
margin-left: 1.5em;
|
||||
}
|
||||
|
||||
.guilabel, .menuselection {
|
||||
font-family: sans-serif;
|
||||
}
|
||||
|
||||
.accelerator {
|
||||
text-decoration: underline;
|
||||
}
|
||||
|
||||
.classifier {
|
||||
font-style: oblique;
|
||||
}
|
||||
|
||||
.classifier:before {
|
||||
font-style: normal;
|
||||
margin: 0.5em;
|
||||
content: ":";
|
||||
}
|
||||
|
||||
abbr, acronym {
|
||||
border-bottom: dotted 1px;
|
||||
cursor: help;
|
||||
}
|
||||
|
||||
/* -- code displays --------------------------------------------------------- */
|
||||
|
||||
pre {
|
||||
overflow: auto;
|
||||
overflow-y: hidden; /* fixes display issues on Chrome browsers */
|
||||
}
|
||||
|
||||
span.pre {
|
||||
-moz-hyphens: none;
|
||||
-ms-hyphens: none;
|
||||
-webkit-hyphens: none;
|
||||
hyphens: none;
|
||||
}
|
||||
|
||||
td.linenos pre {
|
||||
padding: 5px 0px;
|
||||
border: 0;
|
||||
background-color: transparent;
|
||||
color: #aaa;
|
||||
}
|
||||
|
||||
table.highlighttable {
|
||||
margin-left: 0.5em;
|
||||
}
|
||||
|
||||
table.highlighttable td {
|
||||
padding: 0 0.5em 0 0.5em;
|
||||
}
|
||||
|
||||
div.code-block-caption {
|
||||
padding: 2px 5px;
|
||||
font-size: small;
|
||||
}
|
||||
|
||||
div.code-block-caption code {
|
||||
background-color: transparent;
|
||||
}
|
||||
|
||||
div.code-block-caption + div > div.highlight > pre {
|
||||
margin-top: 0;
|
||||
}
|
||||
|
||||
div.doctest > div.highlight span.gp { /* gp: Generic.Prompt */
|
||||
user-select: none;
|
||||
}
|
||||
|
||||
div.code-block-caption span.caption-number {
|
||||
padding: 0.1em 0.3em;
|
||||
font-style: italic;
|
||||
}
|
||||
|
||||
div.code-block-caption span.caption-text {
|
||||
}
|
||||
|
||||
div.literal-block-wrapper {
|
||||
padding: 1em 1em 0;
|
||||
}
|
||||
|
||||
div.literal-block-wrapper div.highlight {
|
||||
margin: 0;
|
||||
}
|
||||
|
||||
code.descname {
|
||||
background-color: transparent;
|
||||
font-weight: bold;
|
||||
font-size: 1.2em;
|
||||
}
|
||||
|
||||
code.descclassname {
|
||||
background-color: transparent;
|
||||
}
|
||||
|
||||
code.xref, a code {
|
||||
background-color: transparent;
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
h1 code, h2 code, h3 code, h4 code, h5 code, h6 code {
|
||||
background-color: transparent;
|
||||
}
|
||||
|
||||
.viewcode-link {
|
||||
float: right;
|
||||
}
|
||||
|
||||
.viewcode-back {
|
||||
float: right;
|
||||
font-family: sans-serif;
|
||||
}
|
||||
|
||||
div.viewcode-block:target {
|
||||
margin: -1px -10px;
|
||||
padding: 0 10px;
|
||||
}
|
||||
|
||||
/* -- math display ---------------------------------------------------------- */
|
||||
|
||||
img.math {
|
||||
vertical-align: middle;
|
||||
}
|
||||
|
||||
div.body div.math p {
|
||||
text-align: center;
|
||||
}
|
||||
|
||||
span.eqno {
|
||||
float: right;
|
||||
}
|
||||
|
||||
span.eqno a.headerlink {
|
||||
position: relative;
|
||||
left: 0px;
|
||||
z-index: 1;
|
||||
}
|
||||
|
||||
div.math:hover a.headerlink {
|
||||
visibility: visible;
|
||||
}
|
||||
|
||||
/* -- printout stylesheet --------------------------------------------------- */
|
||||
|
||||
@media print {
|
||||
div.document,
|
||||
div.documentwrapper,
|
||||
div.bodywrapper {
|
||||
margin: 0 !important;
|
||||
width: 100%;
|
||||
}
|
||||
|
||||
div.sphinxsidebar,
|
||||
div.related,
|
||||
div.footer,
|
||||
#top-link {
|
||||
display: none;
|
||||
}
|
||||
}
|
||||
@ -0,0 +1,266 @@
|
||||
/*
|
||||
* classic.css_t
|
||||
* ~~~~~~~~~~~~~
|
||||
*
|
||||
* Sphinx stylesheet -- classic theme.
|
||||
*
|
||||
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
|
||||
* :license: BSD, see LICENSE for details.
|
||||
*
|
||||
*/
|
||||
|
||||
@import url("basic.css");
|
||||
|
||||
/* -- page layout ----------------------------------------------------------- */
|
||||
|
||||
html {
|
||||
/* CSS hack for macOS's scrollbar (see #1125) */
|
||||
background-color: #FFFFFF;
|
||||
}
|
||||
|
||||
body {
|
||||
font-family: sans-serif;
|
||||
font-size: 100%;
|
||||
background-color: #11303d;
|
||||
color: #000;
|
||||
margin: 0;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
div.document {
|
||||
background-color: #1c4e63;
|
||||
}
|
||||
|
||||
div.documentwrapper {
|
||||
float: left;
|
||||
width: 100%;
|
||||
}
|
||||
|
||||
div.bodywrapper {
|
||||
margin: 0 0 0 230px;
|
||||
}
|
||||
|
||||
div.body {
|
||||
background-color: #ffffff;
|
||||
color: #000000;
|
||||
padding: 0 20px 30px 20px;
|
||||
}
|
||||
|
||||
div.footer {
|
||||
color: #ffffff;
|
||||
width: 100%;
|
||||
padding: 9px 0 9px 0;
|
||||
text-align: center;
|
||||
font-size: 75%;
|
||||
}
|
||||
|
||||
div.footer a {
|
||||
color: #ffffff;
|
||||
text-decoration: underline;
|
||||
}
|
||||
|
||||
div.related {
|
||||
background-color: #133f52;
|
||||
line-height: 30px;
|
||||
color: #ffffff;
|
||||
}
|
||||
|
||||
div.related a {
|
||||
color: #ffffff;
|
||||
}
|
||||
|
||||
div.sphinxsidebar {
|
||||
}
|
||||
|
||||
div.sphinxsidebar h3 {
|
||||
font-family: 'Trebuchet MS', sans-serif;
|
||||
color: #ffffff;
|
||||
font-size: 1.4em;
|
||||
font-weight: normal;
|
||||
margin: 0;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
div.sphinxsidebar h3 a {
|
||||
color: #ffffff;
|
||||
}
|
||||
|
||||
div.sphinxsidebar h4 {
|
||||
font-family: 'Trebuchet MS', sans-serif;
|
||||
color: #ffffff;
|
||||
font-size: 1.3em;
|
||||
font-weight: normal;
|
||||
margin: 5px 0 0 0;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
div.sphinxsidebar p {
|
||||
color: #ffffff;
|
||||
}
|
||||
|
||||
div.sphinxsidebar p.topless {
|
||||
margin: 5px 10px 10px 10px;
|
||||
}
|
||||
|
||||
div.sphinxsidebar ul {
|
||||
margin: 10px;
|
||||
padding: 0;
|
||||
color: #ffffff;
|
||||
}
|
||||
|
||||
div.sphinxsidebar a {
|
||||
color: #98dbcc;
|
||||
}
|
||||
|
||||
div.sphinxsidebar input {
|
||||
border: 1px solid #98dbcc;
|
||||
font-family: sans-serif;
|
||||
font-size: 1em;
|
||||
}
|
||||
|
||||
|
||||
|
||||
/* -- hyperlink styles ------------------------------------------------------ */
|
||||
|
||||
a {
|
||||
color: #355f7c;
|
||||
text-decoration: none;
|
||||
}
|
||||
|
||||
a:visited {
|
||||
color: #355f7c;
|
||||
text-decoration: none;
|
||||
}
|
||||
|
||||
a:hover {
|
||||
text-decoration: underline;
|
||||
}
|
||||
|
||||
|
||||
|
||||
/* -- body styles ----------------------------------------------------------- */
|
||||
|
||||
div.body h1,
|
||||
div.body h2,
|
||||
div.body h3,
|
||||
div.body h4,
|
||||
div.body h5,
|
||||
div.body h6 {
|
||||
font-family: 'Trebuchet MS', sans-serif;
|
||||
background-color: #f2f2f2;
|
||||
font-weight: normal;
|
||||
color: #20435c;
|
||||
border-bottom: 1px solid #ccc;
|
||||
margin: 20px -20px 10px -20px;
|
||||
padding: 3px 0 3px 10px;
|
||||
}
|
||||
|
||||
div.body h1 { margin-top: 0; font-size: 200%; }
|
||||
div.body h2 { font-size: 160%; }
|
||||
div.body h3 { font-size: 140%; }
|
||||
div.body h4 { font-size: 120%; }
|
||||
div.body h5 { font-size: 110%; }
|
||||
div.body h6 { font-size: 100%; }
|
||||
|
||||
a.headerlink {
|
||||
color: #c60f0f;
|
||||
font-size: 0.8em;
|
||||
padding: 0 4px 0 4px;
|
||||
text-decoration: none;
|
||||
}
|
||||
|
||||
a.headerlink:hover {
|
||||
background-color: #c60f0f;
|
||||
color: white;
|
||||
}
|
||||
|
||||
div.body p, div.body dd, div.body li, div.body blockquote {
|
||||
text-align: justify;
|
||||
line-height: 130%;
|
||||
}
|
||||
|
||||
div.admonition p.admonition-title + p {
|
||||
display: inline;
|
||||
}
|
||||
|
||||
div.admonition p {
|
||||
margin-bottom: 5px;
|
||||
}
|
||||
|
||||
div.admonition pre {
|
||||
margin-bottom: 5px;
|
||||
}
|
||||
|
||||
div.admonition ul, div.admonition ol {
|
||||
margin-bottom: 5px;
|
||||
}
|
||||
|
||||
div.note {
|
||||
background-color: #eee;
|
||||
border: 1px solid #ccc;
|
||||
}
|
||||
|
||||
div.seealso {
|
||||
background-color: #ffc;
|
||||
border: 1px solid #ff6;
|
||||
}
|
||||
|
||||
div.topic {
|
||||
background-color: #eee;
|
||||
}
|
||||
|
||||
div.warning {
|
||||
background-color: #ffe4e4;
|
||||
border: 1px solid #f66;
|
||||
}
|
||||
|
||||
p.admonition-title {
|
||||
display: inline;
|
||||
}
|
||||
|
||||
p.admonition-title:after {
|
||||
content: ":";
|
||||
}
|
||||
|
||||
pre {
|
||||
padding: 5px;
|
||||
background-color: #eeffcc;
|
||||
color: #333333;
|
||||
line-height: 120%;
|
||||
border: 1px solid #ac9;
|
||||
border-left: none;
|
||||
border-right: none;
|
||||
}
|
||||
|
||||
code {
|
||||
background-color: #ecf0f3;
|
||||
padding: 0 1px 0 1px;
|
||||
font-size: 0.95em;
|
||||
}
|
||||
|
||||
th, dl.field-list > dt {
|
||||
background-color: #ede;
|
||||
}
|
||||
|
||||
.warning code {
|
||||
background: #efc2c2;
|
||||
}
|
||||
|
||||
.note code {
|
||||
background: #d6d6d6;
|
||||
}
|
||||
|
||||
.viewcode-back {
|
||||
font-family: sans-serif;
|
||||
}
|
||||
|
||||
div.viewcode-block:target {
|
||||
background-color: #f4debf;
|
||||
border-top: 1px solid #ac9;
|
||||
border-bottom: 1px solid #ac9;
|
||||
}
|
||||
|
||||
div.code-block-caption {
|
||||
color: #efefef;
|
||||
background-color: #1c4e63;
|
||||
}
|
||||
@ -0,0 +1,52 @@
|
||||
/* Main colors from https://color.adobe.com/fr/Copy-of-NOUEBO-Original-color-theme-11116609 */
|
||||
:root{
|
||||
--main-bg-color: #324D5C;
|
||||
--link-color: #14B278;
|
||||
}
|
||||
|
||||
/* Header fonts y */
|
||||
h1, h2, .rst-content .toctree-wrapper p.caption, h3, h4, h5, h6, legend, p.caption {
|
||||
font-family: "Lato","proxima-nova","Helvetica Neue",Arial,sans-serif;
|
||||
}
|
||||
|
||||
|
||||
/* Docs background */
|
||||
.wy-side-nav-search{
|
||||
background-color: var(--main-bg-color);
|
||||
}
|
||||
|
||||
/* Mobile version */
|
||||
.wy-nav-top{
|
||||
background-color: var(--main-bg-color);
|
||||
}
|
||||
|
||||
/* Change link colors (except for the menu) */
|
||||
a {
|
||||
color: var(--link-color);
|
||||
}
|
||||
|
||||
a:hover {
|
||||
color: #4F778F;
|
||||
}
|
||||
|
||||
.wy-menu a {
|
||||
color: #b3b3b3;
|
||||
}
|
||||
|
||||
.wy-menu a:hover {
|
||||
color: #b3b3b3;
|
||||
}
|
||||
|
||||
a.icon.icon-home {
|
||||
color: #b3b3b3;
|
||||
}
|
||||
|
||||
.version{
|
||||
color: var(--link-color) !important;
|
||||
}
|
||||
|
||||
|
||||
/* Make code blocks have a background */
|
||||
.codeblock,pre.literal-block,.rst-content .literal-block,.rst-content pre.literal-block,div[class^='highlight'] {
|
||||
background: #f8f8f8;;
|
||||
}
|
||||
File diff suppressed because one or more lines are too long
@ -0,0 +1 @@
|
||||
/* This file intentionally left blank. */
|
||||
@ -0,0 +1 @@
|
||||
@import url("classic.css");
|
||||
@ -0,0 +1,315 @@
|
||||
/*
|
||||
* doctools.js
|
||||
* ~~~~~~~~~~~
|
||||
*
|
||||
* Sphinx JavaScript utilities for all documentation.
|
||||
*
|
||||
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
|
||||
* :license: BSD, see LICENSE for details.
|
||||
*
|
||||
*/
|
||||
|
||||
/**
|
||||
* select a different prefix for underscore
|
||||
*/
|
||||
$u = _.noConflict();
|
||||
|
||||
/**
|
||||
* make the code below compatible with browsers without
|
||||
* an installed firebug like debugger
|
||||
if (!window.console || !console.firebug) {
|
||||
var names = ["log", "debug", "info", "warn", "error", "assert", "dir",
|
||||
"dirxml", "group", "groupEnd", "time", "timeEnd", "count", "trace",
|
||||
"profile", "profileEnd"];
|
||||
window.console = {};
|
||||
for (var i = 0; i < names.length; ++i)
|
||||
window.console[names[i]] = function() {};
|
||||
}
|
||||
*/
|
||||
|
||||
/**
|
||||
* small helper function to urldecode strings
|
||||
*/
|
||||
jQuery.urldecode = function(x) {
|
||||
return decodeURIComponent(x).replace(/\+/g, ' ');
|
||||
};
|
||||
|
||||
/**
|
||||
* small helper function to urlencode strings
|
||||
*/
|
||||
jQuery.urlencode = encodeURIComponent;
|
||||
|
||||
/**
|
||||
* This function returns the parsed url parameters of the
|
||||
* current request. Multiple values per key are supported,
|
||||
* it will always return arrays of strings for the value parts.
|
||||
*/
|
||||
jQuery.getQueryParameters = function(s) {
|
||||
if (typeof s === 'undefined')
|
||||
s = document.location.search;
|
||||
var parts = s.substr(s.indexOf('?') + 1).split('&');
|
||||
var result = {};
|
||||
for (var i = 0; i < parts.length; i++) {
|
||||
var tmp = parts[i].split('=', 2);
|
||||
var key = jQuery.urldecode(tmp[0]);
|
||||
var value = jQuery.urldecode(tmp[1]);
|
||||
if (key in result)
|
||||
result[key].push(value);
|
||||
else
|
||||
result[key] = [value];
|
||||
}
|
||||
return result;
|
||||
};
|
||||
|
||||
/**
|
||||
* highlight a given string on a jquery object by wrapping it in
|
||||
* span elements with the given class name.
|
||||
*/
|
||||
jQuery.fn.highlightText = function(text, className) {
|
||||
function highlight(node, addItems) {
|
||||
if (node.nodeType === 3) {
|
||||
var val = node.nodeValue;
|
||||
var pos = val.toLowerCase().indexOf(text);
|
||||
if (pos >= 0 &&
|
||||
!jQuery(node.parentNode).hasClass(className) &&
|
||||
!jQuery(node.parentNode).hasClass("nohighlight")) {
|
||||
var span;
|
||||
var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg");
|
||||
if (isInSVG) {
|
||||
span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
|
||||
} else {
|
||||
span = document.createElement("span");
|
||||
span.className = className;
|
||||
}
|
||||
span.appendChild(document.createTextNode(val.substr(pos, text.length)));
|
||||
node.parentNode.insertBefore(span, node.parentNode.insertBefore(
|
||||
document.createTextNode(val.substr(pos + text.length)),
|
||||
node.nextSibling));
|
||||
node.nodeValue = val.substr(0, pos);
|
||||
if (isInSVG) {
|
||||
var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect");
|
||||
var bbox = node.parentElement.getBBox();
|
||||
rect.x.baseVal.value = bbox.x;
|
||||
rect.y.baseVal.value = bbox.y;
|
||||
rect.width.baseVal.value = bbox.width;
|
||||
rect.height.baseVal.value = bbox.height;
|
||||
rect.setAttribute('class', className);
|
||||
addItems.push({
|
||||
"parent": node.parentNode,
|
||||
"target": rect});
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (!jQuery(node).is("button, select, textarea")) {
|
||||
jQuery.each(node.childNodes, function() {
|
||||
highlight(this, addItems);
|
||||
});
|
||||
}
|
||||
}
|
||||
var addItems = [];
|
||||
var result = this.each(function() {
|
||||
highlight(this, addItems);
|
||||
});
|
||||
for (var i = 0; i < addItems.length; ++i) {
|
||||
jQuery(addItems[i].parent).before(addItems[i].target);
|
||||
}
|
||||
return result;
|
||||
};
|
||||
|
||||
/*
|
||||
* backward compatibility for jQuery.browser
|
||||
* This will be supported until firefox bug is fixed.
|
||||
*/
|
||||
if (!jQuery.browser) {
|
||||
jQuery.uaMatch = function(ua) {
|
||||
ua = ua.toLowerCase();
|
||||
|
||||
var match = /(chrome)[ \/]([\w.]+)/.exec(ua) ||
|
||||
/(webkit)[ \/]([\w.]+)/.exec(ua) ||
|
||||
/(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) ||
|
||||
/(msie) ([\w.]+)/.exec(ua) ||
|
||||
ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) ||
|
||||
[];
|
||||
|
||||
return {
|
||||
browser: match[ 1 ] || "",
|
||||
version: match[ 2 ] || "0"
|
||||
};
|
||||
};
|
||||
jQuery.browser = {};
|
||||
jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true;
|
||||
}
|
||||
|
||||
/**
|
||||
* Small JavaScript module for the documentation.
|
||||
*/
|
||||
var Documentation = {
|
||||
|
||||
init : function() {
|
||||
this.fixFirefoxAnchorBug();
|
||||
this.highlightSearchWords();
|
||||
this.initIndexTable();
|
||||
if (DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) {
|
||||
this.initOnKeyListeners();
|
||||
}
|
||||
},
|
||||
|
||||
/**
|
||||
* i18n support
|
||||
*/
|
||||
TRANSLATIONS : {},
|
||||
PLURAL_EXPR : function(n) { return n === 1 ? 0 : 1; },
|
||||
LOCALE : 'unknown',
|
||||
|
||||
// gettext and ngettext don't access this so that the functions
|
||||
// can safely bound to a different name (_ = Documentation.gettext)
|
||||
gettext : function(string) {
|
||||
var translated = Documentation.TRANSLATIONS[string];
|
||||
if (typeof translated === 'undefined')
|
||||
return string;
|
||||
return (typeof translated === 'string') ? translated : translated[0];
|
||||
},
|
||||
|
||||
ngettext : function(singular, plural, n) {
|
||||
var translated = Documentation.TRANSLATIONS[singular];
|
||||
if (typeof translated === 'undefined')
|
||||
return (n == 1) ? singular : plural;
|
||||
return translated[Documentation.PLURALEXPR(n)];
|
||||
},
|
||||
|
||||
addTranslations : function(catalog) {
|
||||
for (var key in catalog.messages)
|
||||
this.TRANSLATIONS[key] = catalog.messages[key];
|
||||
this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')');
|
||||
this.LOCALE = catalog.locale;
|
||||
},
|
||||
|
||||
/**
|
||||
* add context elements like header anchor links
|
||||
*/
|
||||
addContextElements : function() {
|
||||
$('div[id] > :header:first').each(function() {
|
||||
$('<a class="headerlink">\u00B6</a>').
|
||||
attr('href', '#' + this.id).
|
||||
attr('title', _('Permalink to this headline')).
|
||||
appendTo(this);
|
||||
});
|
||||
$('dt[id]').each(function() {
|
||||
$('<a class="headerlink">\u00B6</a>').
|
||||
attr('href', '#' + this.id).
|
||||
attr('title', _('Permalink to this definition')).
|
||||
appendTo(this);
|
||||
});
|
||||
},
|
||||
|
||||
/**
|
||||
* workaround a firefox stupidity
|
||||
* see: https://bugzilla.mozilla.org/show_bug.cgi?id=645075
|
||||
*/
|
||||
fixFirefoxAnchorBug : function() {
|
||||
if (document.location.hash && $.browser.mozilla)
|
||||
window.setTimeout(function() {
|
||||
document.location.href += '';
|
||||
}, 10);
|
||||
},
|
||||
|
||||
/**
|
||||
* highlight the search words provided in the url in the text
|
||||
*/
|
||||
highlightSearchWords : function() {
|
||||
var params = $.getQueryParameters();
|
||||
var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : [];
|
||||
if (terms.length) {
|
||||
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|
||||
if (!body.length) {
|
||||
body = $('body');
|
||||
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|
||||
window.setTimeout(function() {
|
||||
$.each(terms, function() {
|
||||
body.highlightText(this.toLowerCase(), 'highlighted');
|
||||
});
|
||||
}, 10);
|
||||
$('<p class="highlight-link"><a href="javascript:Documentation.' +
|
||||
'hideSearchWords()">' + _('Hide Search Matches') + '</a></p>')
|
||||
.appendTo($('#searchbox'));
|
||||
}
|
||||
},
|
||||
|
||||
/**
|
||||
* init the domain index toggle buttons
|
||||
*/
|
||||
initIndexTable : function() {
|
||||
var togglers = $('img.toggler').click(function() {
|
||||
var src = $(this).attr('src');
|
||||
var idnum = $(this).attr('id').substr(7);
|
||||
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|
||||
if (src.substr(-9) === 'minus.png')
|
||||
$(this).attr('src', src.substr(0, src.length-9) + 'plus.png');
|
||||
else
|
||||
$(this).attr('src', src.substr(0, src.length-8) + 'minus.png');
|
||||
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|
||||
if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) {
|
||||
togglers.click();
|
||||
}
|
||||
},
|
||||
|
||||
/**
|
||||
* helper function to hide the search marks again
|
||||
*/
|
||||
hideSearchWords : function() {
|
||||
$('#searchbox .highlight-link').fadeOut(300);
|
||||
$('span.highlighted').removeClass('highlighted');
|
||||
},
|
||||
|
||||
/**
|
||||
* make the url absolute
|
||||
*/
|
||||
makeURL : function(relativeURL) {
|
||||
return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL;
|
||||
},
|
||||
|
||||
/**
|
||||
* get the current relative url
|
||||
*/
|
||||
getCurrentURL : function() {
|
||||
var path = document.location.pathname;
|
||||
var parts = path.split(/\//);
|
||||
$.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() {
|
||||
if (this === '..')
|
||||
parts.pop();
|
||||
});
|
||||
var url = parts.join('/');
|
||||
return path.substring(url.lastIndexOf('/') + 1, path.length - 1);
|
||||
},
|
||||
|
||||
initOnKeyListeners: function() {
|
||||
$(document).keydown(function(event) {
|
||||
var activeElementType = document.activeElement.tagName;
|
||||
// don't navigate when in search box or textarea
|
||||
if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT'
|
||||
&& !event.altKey && !event.ctrlKey && !event.metaKey && !event.shiftKey) {
|
||||
switch (event.keyCode) {
|
||||
case 37: // left
|
||||
var prevHref = $('link[rel="prev"]').prop('href');
|
||||
if (prevHref) {
|
||||
window.location.href = prevHref;
|
||||
return false;
|
||||
}
|
||||
case 39: // right
|
||||
var nextHref = $('link[rel="next"]').prop('href');
|
||||
if (nextHref) {
|
||||
window.location.href = nextHref;
|
||||
return false;
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
};
|
||||
|
||||
// quick alias for translations
|
||||
_ = Documentation.gettext;
|
||||
|
||||
$(document).ready(function() {
|
||||
Documentation.init();
|
||||
});
|
||||
@ -0,0 +1,12 @@
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
|
||||
VERSION: '1.0.0',
|
||||
LANGUAGE: 'python',
|
||||
COLLAPSE_INDEX: false,
|
||||
BUILDER: 'html',
|
||||
FILE_SUFFIX: '.html',
|
||||
LINK_SUFFIX: '.html',
|
||||
HAS_SOURCE: true,
|
||||
SOURCELINK_SUFFIX: '.txt',
|
||||
NAVIGATION_WITH_KEYS: false
|
||||
};
|
||||
|
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|
||||
/*
|
||||
* language_data.js
|
||||
* ~~~~~~~~~~~~~~~~
|
||||
*
|
||||
* This script contains the language-specific data used by searchtools.js,
|
||||
* namely the list of stopwords, stemmer, scorer and splitter.
|
||||
*
|
||||
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
|
||||
* :license: BSD, see LICENSE for details.
|
||||
*
|
||||
*/
|
||||
|
||||
var stopwords = ["a","and","are","as","at","be","but","by","for","if","in","into","is","it","near","no","not","of","on","or","such","that","the","their","then","there","these","they","this","to","was","will","with"];
|
||||
|
||||
|
||||
/* Non-minified version JS is _stemmer.js if file is provided */
|
||||
/**
|
||||
* Porter Stemmer
|
||||
*/
|
||||
var Stemmer = function() {
|
||||
|
||||
var step2list = {
|
||||
ational: 'ate',
|
||||
tional: 'tion',
|
||||
enci: 'ence',
|
||||
anci: 'ance',
|
||||
izer: 'ize',
|
||||
bli: 'ble',
|
||||
alli: 'al',
|
||||
entli: 'ent',
|
||||
eli: 'e',
|
||||
ousli: 'ous',
|
||||
ization: 'ize',
|
||||
ation: 'ate',
|
||||
ator: 'ate',
|
||||
alism: 'al',
|
||||
iveness: 'ive',
|
||||
fulness: 'ful',
|
||||
ousness: 'ous',
|
||||
aliti: 'al',
|
||||
iviti: 'ive',
|
||||
biliti: 'ble',
|
||||
logi: 'log'
|
||||
};
|
||||
|
||||
var step3list = {
|
||||
icate: 'ic',
|
||||
ative: '',
|
||||
alize: 'al',
|
||||
iciti: 'ic',
|
||||
ical: 'ic',
|
||||
ful: '',
|
||||
ness: ''
|
||||
};
|
||||
|
||||
var c = "[^aeiou]"; // consonant
|
||||
var v = "[aeiouy]"; // vowel
|
||||
var C = c + "[^aeiouy]*"; // consonant sequence
|
||||
var V = v + "[aeiou]*"; // vowel sequence
|
||||
|
||||
var mgr0 = "^(" + C + ")?" + V + C; // [C]VC... is m>0
|
||||
var meq1 = "^(" + C + ")?" + V + C + "(" + V + ")?$"; // [C]VC[V] is m=1
|
||||
var mgr1 = "^(" + C + ")?" + V + C + V + C; // [C]VCVC... is m>1
|
||||
var s_v = "^(" + C + ")?" + v; // vowel in stem
|
||||
|
||||
this.stemWord = function (w) {
|
||||
var stem;
|
||||
var suffix;
|
||||
var firstch;
|
||||
var origword = w;
|
||||
|
||||
if (w.length < 3)
|
||||
return w;
|
||||
|
||||
var re;
|
||||
var re2;
|
||||
var re3;
|
||||
var re4;
|
||||
|
||||
firstch = w.substr(0,1);
|
||||
if (firstch == "y")
|
||||
w = firstch.toUpperCase() + w.substr(1);
|
||||
|
||||
// Step 1a
|
||||
re = /^(.+?)(ss|i)es$/;
|
||||
re2 = /^(.+?)([^s])s$/;
|
||||
|
||||
if (re.test(w))
|
||||
w = w.replace(re,"$1$2");
|
||||
else if (re2.test(w))
|
||||
w = w.replace(re2,"$1$2");
|
||||
|
||||
// Step 1b
|
||||
re = /^(.+?)eed$/;
|
||||
re2 = /^(.+?)(ed|ing)$/;
|
||||
if (re.test(w)) {
|
||||
var fp = re.exec(w);
|
||||
re = new RegExp(mgr0);
|
||||
if (re.test(fp[1])) {
|
||||
re = /.$/;
|
||||
w = w.replace(re,"");
|
||||
}
|
||||
}
|
||||
else if (re2.test(w)) {
|
||||
var fp = re2.exec(w);
|
||||
stem = fp[1];
|
||||
re2 = new RegExp(s_v);
|
||||
if (re2.test(stem)) {
|
||||
w = stem;
|
||||
re2 = /(at|bl|iz)$/;
|
||||
re3 = new RegExp("([^aeiouylsz])\\1$");
|
||||
re4 = new RegExp("^" + C + v + "[^aeiouwxy]$");
|
||||
if (re2.test(w))
|
||||
w = w + "e";
|
||||
else if (re3.test(w)) {
|
||||
re = /.$/;
|
||||
w = w.replace(re,"");
|
||||
}
|
||||
else if (re4.test(w))
|
||||
w = w + "e";
|
||||
}
|
||||
}
|
||||
|
||||
// Step 1c
|
||||
re = /^(.+?)y$/;
|
||||
if (re.test(w)) {
|
||||
var fp = re.exec(w);
|
||||
stem = fp[1];
|
||||
re = new RegExp(s_v);
|
||||
if (re.test(stem))
|
||||
w = stem + "i";
|
||||
}
|
||||
|
||||
// Step 2
|
||||
re = /^(.+?)(ational|tional|enci|anci|izer|bli|alli|entli|eli|ousli|ization|ation|ator|alism|iveness|fulness|ousness|aliti|iviti|biliti|logi)$/;
|
||||
if (re.test(w)) {
|
||||
var fp = re.exec(w);
|
||||
stem = fp[1];
|
||||
suffix = fp[2];
|
||||
re = new RegExp(mgr0);
|
||||
if (re.test(stem))
|
||||
w = stem + step2list[suffix];
|
||||
}
|
||||
|
||||
// Step 3
|
||||
re = /^(.+?)(icate|ative|alize|iciti|ical|ful|ness)$/;
|
||||
if (re.test(w)) {
|
||||
var fp = re.exec(w);
|
||||
stem = fp[1];
|
||||
suffix = fp[2];
|
||||
re = new RegExp(mgr0);
|
||||
if (re.test(stem))
|
||||
w = stem + step3list[suffix];
|
||||
}
|
||||
|
||||
// Step 4
|
||||
re = /^(.+?)(al|ance|ence|er|ic|able|ible|ant|ement|ment|ent|ou|ism|ate|iti|ous|ive|ize)$/;
|
||||
re2 = /^(.+?)(s|t)(ion)$/;
|
||||
if (re.test(w)) {
|
||||
var fp = re.exec(w);
|
||||
stem = fp[1];
|
||||
re = new RegExp(mgr1);
|
||||
if (re.test(stem))
|
||||
w = stem;
|
||||
}
|
||||
else if (re2.test(w)) {
|
||||
var fp = re2.exec(w);
|
||||
stem = fp[1] + fp[2];
|
||||
re2 = new RegExp(mgr1);
|
||||
if (re2.test(stem))
|
||||
w = stem;
|
||||
}
|
||||
|
||||
// Step 5
|
||||
re = /^(.+?)e$/;
|
||||
if (re.test(w)) {
|
||||
var fp = re.exec(w);
|
||||
stem = fp[1];
|
||||
re = new RegExp(mgr1);
|
||||
re2 = new RegExp(meq1);
|
||||
re3 = new RegExp("^" + C + v + "[^aeiouwxy]$");
|
||||
if (re.test(stem) || (re2.test(stem) && !(re3.test(stem))))
|
||||
w = stem;
|
||||
}
|
||||
re = /ll$/;
|
||||
re2 = new RegExp(mgr1);
|
||||
if (re.test(w) && re2.test(w)) {
|
||||
re = /.$/;
|
||||
w = w.replace(re,"");
|
||||
}
|
||||
|
||||
// and turn initial Y back to y
|
||||
if (firstch == "y")
|
||||
w = firstch.toLowerCase() + w.substr(1);
|
||||
return w;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
var splitChars = (function() {
|
||||
var result = {};
|
||||
var singles = [96, 180, 187, 191, 215, 247, 749, 885, 903, 907, 909, 930, 1014, 1648,
|
||||
1748, 1809, 2416, 2473, 2481, 2526, 2601, 2609, 2612, 2615, 2653, 2702,
|
||||
2706, 2729, 2737, 2740, 2857, 2865, 2868, 2910, 2928, 2948, 2961, 2971,
|
||||
2973, 3085, 3089, 3113, 3124, 3213, 3217, 3241, 3252, 3295, 3341, 3345,
|
||||
3369, 3506, 3516, 3633, 3715, 3721, 3736, 3744, 3748, 3750, 3756, 3761,
|
||||
3781, 3912, 4239, 4347, 4681, 4695, 4697, 4745, 4785, 4799, 4801, 4823,
|
||||
4881, 5760, 5901, 5997, 6313, 7405, 8024, 8026, 8028, 8030, 8117, 8125,
|
||||
8133, 8181, 8468, 8485, 8487, 8489, 8494, 8527, 11311, 11359, 11687, 11695,
|
||||
11703, 11711, 11719, 11727, 11735, 12448, 12539, 43010, 43014, 43019, 43587,
|
||||
43696, 43713, 64286, 64297, 64311, 64317, 64319, 64322, 64325, 65141];
|
||||
var i, j, start, end;
|
||||
for (i = 0; i < singles.length; i++) {
|
||||
result[singles[i]] = true;
|
||||
}
|
||||
var ranges = [[0, 47], [58, 64], [91, 94], [123, 169], [171, 177], [182, 184], [706, 709],
|
||||
[722, 735], [741, 747], [751, 879], [888, 889], [894, 901], [1154, 1161],
|
||||
[1318, 1328], [1367, 1368], [1370, 1376], [1416, 1487], [1515, 1519], [1523, 1568],
|
||||
[1611, 1631], [1642, 1645], [1750, 1764], [1767, 1773], [1789, 1790], [1792, 1807],
|
||||
[1840, 1868], [1958, 1968], [1970, 1983], [2027, 2035], [2038, 2041], [2043, 2047],
|
||||
[2070, 2073], [2075, 2083], [2085, 2087], [2089, 2307], [2362, 2364], [2366, 2383],
|
||||
[2385, 2391], [2402, 2405], [2419, 2424], [2432, 2436], [2445, 2446], [2449, 2450],
|
||||
[2483, 2485], [2490, 2492], [2494, 2509], [2511, 2523], [2530, 2533], [2546, 2547],
|
||||
[2554, 2564], [2571, 2574], [2577, 2578], [2618, 2648], [2655, 2661], [2672, 2673],
|
||||
[2677, 2692], [2746, 2748], [2750, 2767], [2769, 2783], [2786, 2789], [2800, 2820],
|
||||
[2829, 2830], [2833, 2834], [2874, 2876], [2878, 2907], [2914, 2917], [2930, 2946],
|
||||
[2955, 2957], [2966, 2968], [2976, 2978], [2981, 2983], [2987, 2989], [3002, 3023],
|
||||
[3025, 3045], [3059, 3076], [3130, 3132], [3134, 3159], [3162, 3167], [3170, 3173],
|
||||
[3184, 3191], [3199, 3204], [3258, 3260], [3262, 3293], [3298, 3301], [3312, 3332],
|
||||
[3386, 3388], [3390, 3423], [3426, 3429], [3446, 3449], [3456, 3460], [3479, 3481],
|
||||
[3518, 3519], [3527, 3584], [3636, 3647], [3655, 3663], [3674, 3712], [3717, 3718],
|
||||
[3723, 3724], [3726, 3731], [3752, 3753], [3764, 3772], [3774, 3775], [3783, 3791],
|
||||
[3802, 3803], [3806, 3839], [3841, 3871], [3892, 3903], [3949, 3975], [3980, 4095],
|
||||
[4139, 4158], [4170, 4175], [4182, 4185], [4190, 4192], [4194, 4196], [4199, 4205],
|
||||
[4209, 4212], [4226, 4237], [4250, 4255], [4294, 4303], [4349, 4351], [4686, 4687],
|
||||
[4702, 4703], [4750, 4751], [4790, 4791], [4806, 4807], [4886, 4887], [4955, 4968],
|
||||
[4989, 4991], [5008, 5023], [5109, 5120], [5741, 5742], [5787, 5791], [5867, 5869],
|
||||
[5873, 5887], [5906, 5919], [5938, 5951], [5970, 5983], [6001, 6015], [6068, 6102],
|
||||
[6104, 6107], [6109, 6111], [6122, 6127], [6138, 6159], [6170, 6175], [6264, 6271],
|
||||
[6315, 6319], [6390, 6399], [6429, 6469], [6510, 6511], [6517, 6527], [6572, 6592],
|
||||
[6600, 6607], [6619, 6655], [6679, 6687], [6741, 6783], [6794, 6799], [6810, 6822],
|
||||
[6824, 6916], [6964, 6980], [6988, 6991], [7002, 7042], [7073, 7085], [7098, 7167],
|
||||
[7204, 7231], [7242, 7244], [7294, 7400], [7410, 7423], [7616, 7679], [7958, 7959],
|
||||
[7966, 7967], [8006, 8007], [8014, 8015], [8062, 8063], [8127, 8129], [8141, 8143],
|
||||
[8148, 8149], [8156, 8159], [8173, 8177], [8189, 8303], [8306, 8307], [8314, 8318],
|
||||
[8330, 8335], [8341, 8449], [8451, 8454], [8456, 8457], [8470, 8472], [8478, 8483],
|
||||
[8506, 8507], [8512, 8516], [8522, 8525], [8586, 9311], [9372, 9449], [9472, 10101],
|
||||
[10132, 11263], [11493, 11498], [11503, 11516], [11518, 11519], [11558, 11567],
|
||||
[11622, 11630], [11632, 11647], [11671, 11679], [11743, 11822], [11824, 12292],
|
||||
[12296, 12320], [12330, 12336], [12342, 12343], [12349, 12352], [12439, 12444],
|
||||
[12544, 12548], [12590, 12592], [12687, 12689], [12694, 12703], [12728, 12783],
|
||||
[12800, 12831], [12842, 12880], [12896, 12927], [12938, 12976], [12992, 13311],
|
||||
[19894, 19967], [40908, 40959], [42125, 42191], [42238, 42239], [42509, 42511],
|
||||
[42540, 42559], [42592, 42593], [42607, 42622], [42648, 42655], [42736, 42774],
|
||||
[42784, 42785], [42889, 42890], [42893, 43002], [43043, 43055], [43062, 43071],
|
||||
[43124, 43137], [43188, 43215], [43226, 43249], [43256, 43258], [43260, 43263],
|
||||
[43302, 43311], [43335, 43359], [43389, 43395], [43443, 43470], [43482, 43519],
|
||||
[43561, 43583], [43596, 43599], [43610, 43615], [43639, 43641], [43643, 43647],
|
||||
[43698, 43700], [43703, 43704], [43710, 43711], [43715, 43738], [43742, 43967],
|
||||
[44003, 44015], [44026, 44031], [55204, 55215], [55239, 55242], [55292, 55295],
|
||||
[57344, 63743], [64046, 64047], [64110, 64111], [64218, 64255], [64263, 64274],
|
||||
[64280, 64284], [64434, 64466], [64830, 64847], [64912, 64913], [64968, 65007],
|
||||
[65020, 65135], [65277, 65295], [65306, 65312], [65339, 65344], [65371, 65381],
|
||||
[65471, 65473], [65480, 65481], [65488, 65489], [65496, 65497]];
|
||||
for (i = 0; i < ranges.length; i++) {
|
||||
start = ranges[i][0];
|
||||
end = ranges[i][1];
|
||||
for (j = start; j <= end; j++) {
|
||||
result[j] = true;
|
||||
}
|
||||
}
|
||||
return result;
|
||||
})();
|
||||
|
||||
function splitQuery(query) {
|
||||
var result = [];
|
||||
var start = -1;
|
||||
for (var i = 0; i < query.length; i++) {
|
||||
if (splitChars[query.charCodeAt(i)]) {
|
||||
if (start !== -1) {
|
||||
result.push(query.slice(start, i));
|
||||
start = -1;
|
||||
}
|
||||
} else if (start === -1) {
|
||||
start = i;
|
||||
}
|
||||
}
|
||||
if (start !== -1) {
|
||||
result.push(query.slice(start));
|
||||
}
|
||||
return result;
|
||||
}
|
||||
|
||||
|
||||
|
After Width: | Height: | Size: 27 KiB |
|
After Width: | Height: | Size: 90 B |
|
After Width: | Height: | Size: 90 B |
@ -0,0 +1,69 @@
|
||||
.highlight .hll { background-color: #ffffcc }
|
||||
.highlight { background: #f8f8f8; }
|
||||
.highlight .c { color: #408080; font-style: italic } /* Comment */
|
||||
.highlight .err { border: 1px solid #FF0000 } /* Error */
|
||||
.highlight .k { color: #008000; font-weight: bold } /* Keyword */
|
||||
.highlight .o { color: #666666 } /* Operator */
|
||||
.highlight .ch { color: #408080; font-style: italic } /* Comment.Hashbang */
|
||||
.highlight .cm { color: #408080; font-style: italic } /* Comment.Multiline */
|
||||
.highlight .cp { color: #BC7A00 } /* Comment.Preproc */
|
||||
.highlight .cpf { color: #408080; font-style: italic } /* Comment.PreprocFile */
|
||||
.highlight .c1 { color: #408080; font-style: italic } /* Comment.Single */
|
||||
.highlight .cs { color: #408080; font-style: italic } /* Comment.Special */
|
||||
.highlight .gd { color: #A00000 } /* Generic.Deleted */
|
||||
.highlight .ge { font-style: italic } /* Generic.Emph */
|
||||
.highlight .gr { color: #FF0000 } /* Generic.Error */
|
||||
.highlight .gh { color: #000080; font-weight: bold } /* Generic.Heading */
|
||||
.highlight .gi { color: #00A000 } /* Generic.Inserted */
|
||||
.highlight .go { color: #888888 } /* Generic.Output */
|
||||
.highlight .gp { color: #000080; font-weight: bold } /* Generic.Prompt */
|
||||
.highlight .gs { font-weight: bold } /* Generic.Strong */
|
||||
.highlight .gu { color: #800080; font-weight: bold } /* Generic.Subheading */
|
||||
.highlight .gt { color: #0044DD } /* Generic.Traceback */
|
||||
.highlight .kc { color: #008000; font-weight: bold } /* Keyword.Constant */
|
||||
.highlight .kd { color: #008000; font-weight: bold } /* Keyword.Declaration */
|
||||
.highlight .kn { color: #008000; font-weight: bold } /* Keyword.Namespace */
|
||||
.highlight .kp { color: #008000 } /* Keyword.Pseudo */
|
||||
.highlight .kr { color: #008000; font-weight: bold } /* Keyword.Reserved */
|
||||
.highlight .kt { color: #B00040 } /* Keyword.Type */
|
||||
.highlight .m { color: #666666 } /* Literal.Number */
|
||||
.highlight .s { color: #BA2121 } /* Literal.String */
|
||||
.highlight .na { color: #7D9029 } /* Name.Attribute */
|
||||
.highlight .nb { color: #008000 } /* Name.Builtin */
|
||||
.highlight .nc { color: #0000FF; font-weight: bold } /* Name.Class */
|
||||
.highlight .no { color: #880000 } /* Name.Constant */
|
||||
.highlight .nd { color: #AA22FF } /* Name.Decorator */
|
||||
.highlight .ni { color: #999999; font-weight: bold } /* Name.Entity */
|
||||
.highlight .ne { color: #D2413A; font-weight: bold } /* Name.Exception */
|
||||
.highlight .nf { color: #0000FF } /* Name.Function */
|
||||
.highlight .nl { color: #A0A000 } /* Name.Label */
|
||||
.highlight .nn { color: #0000FF; font-weight: bold } /* Name.Namespace */
|
||||
.highlight .nt { color: #008000; font-weight: bold } /* Name.Tag */
|
||||
.highlight .nv { color: #19177C } /* Name.Variable */
|
||||
.highlight .ow { color: #AA22FF; font-weight: bold } /* Operator.Word */
|
||||
.highlight .w { color: #bbbbbb } /* Text.Whitespace */
|
||||
.highlight .mb { color: #666666 } /* Literal.Number.Bin */
|
||||
.highlight .mf { color: #666666 } /* Literal.Number.Float */
|
||||
.highlight .mh { color: #666666 } /* Literal.Number.Hex */
|
||||
.highlight .mi { color: #666666 } /* Literal.Number.Integer */
|
||||
.highlight .mo { color: #666666 } /* Literal.Number.Oct */
|
||||
.highlight .sa { color: #BA2121 } /* Literal.String.Affix */
|
||||
.highlight .sb { color: #BA2121 } /* Literal.String.Backtick */
|
||||
.highlight .sc { color: #BA2121 } /* Literal.String.Char */
|
||||
.highlight .dl { color: #BA2121 } /* Literal.String.Delimiter */
|
||||
.highlight .sd { color: #BA2121; font-style: italic } /* Literal.String.Doc */
|
||||
.highlight .s2 { color: #BA2121 } /* Literal.String.Double */
|
||||
.highlight .se { color: #BB6622; font-weight: bold } /* Literal.String.Escape */
|
||||
.highlight .sh { color: #BA2121 } /* Literal.String.Heredoc */
|
||||
.highlight .si { color: #BB6688; font-weight: bold } /* Literal.String.Interpol */
|
||||
.highlight .sx { color: #008000 } /* Literal.String.Other */
|
||||
.highlight .sr { color: #BB6688 } /* Literal.String.Regex */
|
||||
.highlight .s1 { color: #BA2121 } /* Literal.String.Single */
|
||||
.highlight .ss { color: #19177C } /* Literal.String.Symbol */
|
||||
.highlight .bp { color: #008000 } /* Name.Builtin.Pseudo */
|
||||
.highlight .fm { color: #0000FF } /* Name.Function.Magic */
|
||||
.highlight .vc { color: #19177C } /* Name.Variable.Class */
|
||||
.highlight .vg { color: #19177C } /* Name.Variable.Global */
|
||||
.highlight .vi { color: #19177C } /* Name.Variable.Instance */
|
||||
.highlight .vm { color: #19177C } /* Name.Variable.Magic */
|
||||
.highlight .il { color: #666666 } /* Literal.Number.Integer.Long */
|
||||
@ -0,0 +1,515 @@
|
||||
/*
|
||||
* searchtools.js
|
||||
* ~~~~~~~~~~~~~~~~
|
||||
*
|
||||
* Sphinx JavaScript utilities for the full-text search.
|
||||
*
|
||||
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
|
||||
* :license: BSD, see LICENSE for details.
|
||||
*
|
||||
*/
|
||||
|
||||
if (!Scorer) {
|
||||
/**
|
||||
* Simple result scoring code.
|
||||
*/
|
||||
var Scorer = {
|
||||
// Implement the following function to further tweak the score for each result
|
||||
// The function takes a result array [filename, title, anchor, descr, score]
|
||||
// and returns the new score.
|
||||
/*
|
||||
score: function(result) {
|
||||
return result[4];
|
||||
},
|
||||
*/
|
||||
|
||||
// query matches the full name of an object
|
||||
objNameMatch: 11,
|
||||
// or matches in the last dotted part of the object name
|
||||
objPartialMatch: 6,
|
||||
// Additive scores depending on the priority of the object
|
||||
objPrio: {0: 15, // used to be importantResults
|
||||
1: 5, // used to be objectResults
|
||||
2: -5}, // used to be unimportantResults
|
||||
// Used when the priority is not in the mapping.
|
||||
objPrioDefault: 0,
|
||||
|
||||
// query found in title
|
||||
title: 15,
|
||||
partialTitle: 7,
|
||||
// query found in terms
|
||||
term: 5,
|
||||
partialTerm: 2
|
||||
};
|
||||
}
|
||||
|
||||
if (!splitQuery) {
|
||||
function splitQuery(query) {
|
||||
return query.split(/\s+/);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Search Module
|
||||
*/
|
||||
var Search = {
|
||||
|
||||
_index : null,
|
||||
_queued_query : null,
|
||||
_pulse_status : -1,
|
||||
|
||||
htmlToText : function(htmlString) {
|
||||
var htmlElement = document.createElement('span');
|
||||
htmlElement.innerHTML = htmlString;
|
||||
$(htmlElement).find('.headerlink').remove();
|
||||
docContent = $(htmlElement).find('[role=main]')[0];
|
||||
if(docContent === undefined) {
|
||||
console.warn("Content block not found. Sphinx search tries to obtain it " +
|
||||
"via '[role=main]'. Could you check your theme or template.");
|
||||
return "";
|
||||
}
|
||||
return docContent.textContent || docContent.innerText;
|
||||
},
|
||||
|
||||
init : function() {
|
||||
var params = $.getQueryParameters();
|
||||
if (params.q) {
|
||||
var query = params.q[0];
|
||||
$('input[name="q"]')[0].value = query;
|
||||
this.performSearch(query);
|
||||
}
|
||||
},
|
||||
|
||||
loadIndex : function(url) {
|
||||
$.ajax({type: "GET", url: url, data: null,
|
||||
dataType: "script", cache: true,
|
||||
complete: function(jqxhr, textstatus) {
|
||||
if (textstatus != "success") {
|
||||
document.getElementById("searchindexloader").src = url;
|
||||
}
|
||||
}});
|
||||
},
|
||||
|
||||
setIndex : function(index) {
|
||||
var q;
|
||||
this._index = index;
|
||||
if ((q = this._queued_query) !== null) {
|
||||
this._queued_query = null;
|
||||
Search.query(q);
|
||||
}
|
||||
},
|
||||
|
||||
hasIndex : function() {
|
||||
return this._index !== null;
|
||||
},
|
||||
|
||||
deferQuery : function(query) {
|
||||
this._queued_query = query;
|
||||
},
|
||||
|
||||
stopPulse : function() {
|
||||
this._pulse_status = 0;
|
||||
},
|
||||
|
||||
startPulse : function() {
|
||||
if (this._pulse_status >= 0)
|
||||
return;
|
||||
function pulse() {
|
||||
var i;
|
||||
Search._pulse_status = (Search._pulse_status + 1) % 4;
|
||||
var dotString = '';
|
||||
for (i = 0; i < Search._pulse_status; i++)
|
||||
dotString += '.';
|
||||
Search.dots.text(dotString);
|
||||
if (Search._pulse_status > -1)
|
||||
window.setTimeout(pulse, 500);
|
||||
}
|
||||
pulse();
|
||||
},
|
||||
|
||||
/**
|
||||
* perform a search for something (or wait until index is loaded)
|
||||
*/
|
||||
performSearch : function(query) {
|
||||
// create the required interface elements
|
||||
this.out = $('#search-results');
|
||||
this.title = $('<h2>' + _('Searching') + '</h2>').appendTo(this.out);
|
||||
this.dots = $('<span></span>').appendTo(this.title);
|
||||
this.status = $('<p class="search-summary"> </p>').appendTo(this.out);
|
||||
this.output = $('<ul class="search"/>').appendTo(this.out);
|
||||
|
||||
$('#search-progress').text(_('Preparing search...'));
|
||||
this.startPulse();
|
||||
|
||||
// index already loaded, the browser was quick!
|
||||
if (this.hasIndex())
|
||||
this.query(query);
|
||||
else
|
||||
this.deferQuery(query);
|
||||
},
|
||||
|
||||
/**
|
||||
* execute search (requires search index to be loaded)
|
||||
*/
|
||||
query : function(query) {
|
||||
var i;
|
||||
|
||||
// stem the searchterms and add them to the correct list
|
||||
var stemmer = new Stemmer();
|
||||
var searchterms = [];
|
||||
var excluded = [];
|
||||
var hlterms = [];
|
||||
var tmp = splitQuery(query);
|
||||
var objectterms = [];
|
||||
for (i = 0; i < tmp.length; i++) {
|
||||
if (tmp[i] !== "") {
|
||||
objectterms.push(tmp[i].toLowerCase());
|
||||
}
|
||||
|
||||
if ($u.indexOf(stopwords, tmp[i].toLowerCase()) != -1 || tmp[i].match(/^\d+$/) ||
|
||||
tmp[i] === "") {
|
||||
// skip this "word"
|
||||
continue;
|
||||
}
|
||||
// stem the word
|
||||
var word = stemmer.stemWord(tmp[i].toLowerCase());
|
||||
// prevent stemmer from cutting word smaller than two chars
|
||||
if(word.length < 3 && tmp[i].length >= 3) {
|
||||
word = tmp[i];
|
||||
}
|
||||
var toAppend;
|
||||
// select the correct list
|
||||
if (word[0] == '-') {
|
||||
toAppend = excluded;
|
||||
word = word.substr(1);
|
||||
}
|
||||
else {
|
||||
toAppend = searchterms;
|
||||
hlterms.push(tmp[i].toLowerCase());
|
||||
}
|
||||
// only add if not already in the list
|
||||
if (!$u.contains(toAppend, word))
|
||||
toAppend.push(word);
|
||||
}
|
||||
var highlightstring = '?highlight=' + $.urlencode(hlterms.join(" "));
|
||||
|
||||
// console.debug('SEARCH: searching for:');
|
||||
// console.info('required: ', searchterms);
|
||||
// console.info('excluded: ', excluded);
|
||||
|
||||
// prepare search
|
||||
var terms = this._index.terms;
|
||||
var titleterms = this._index.titleterms;
|
||||
|
||||
// array of [filename, title, anchor, descr, score]
|
||||
var results = [];
|
||||
$('#search-progress').empty();
|
||||
|
||||
// lookup as object
|
||||
for (i = 0; i < objectterms.length; i++) {
|
||||
var others = [].concat(objectterms.slice(0, i),
|
||||
objectterms.slice(i+1, objectterms.length));
|
||||
results = results.concat(this.performObjectSearch(objectterms[i], others));
|
||||
}
|
||||
|
||||
// lookup as search terms in fulltext
|
||||
results = results.concat(this.performTermsSearch(searchterms, excluded, terms, titleterms));
|
||||
|
||||
// let the scorer override scores with a custom scoring function
|
||||
if (Scorer.score) {
|
||||
for (i = 0; i < results.length; i++)
|
||||
results[i][4] = Scorer.score(results[i]);
|
||||
}
|
||||
|
||||
// now sort the results by score (in opposite order of appearance, since the
|
||||
// display function below uses pop() to retrieve items) and then
|
||||
// alphabetically
|
||||
results.sort(function(a, b) {
|
||||
var left = a[4];
|
||||
var right = b[4];
|
||||
if (left > right) {
|
||||
return 1;
|
||||
} else if (left < right) {
|
||||
return -1;
|
||||
} else {
|
||||
// same score: sort alphabetically
|
||||
left = a[1].toLowerCase();
|
||||
right = b[1].toLowerCase();
|
||||
return (left > right) ? -1 : ((left < right) ? 1 : 0);
|
||||
}
|
||||
});
|
||||
|
||||
// for debugging
|
||||
//Search.lastresults = results.slice(); // a copy
|
||||
//console.info('search results:', Search.lastresults);
|
||||
|
||||
// print the results
|
||||
var resultCount = results.length;
|
||||
function displayNextItem() {
|
||||
// results left, load the summary and display it
|
||||
if (results.length) {
|
||||
var item = results.pop();
|
||||
var listItem = $('<li style="display:none"></li>');
|
||||
var requestUrl = "";
|
||||
var linkUrl = "";
|
||||
if (DOCUMENTATION_OPTIONS.BUILDER === 'dirhtml') {
|
||||
// dirhtml builder
|
||||
var dirname = item[0] + '/';
|
||||
if (dirname.match(/\/index\/$/)) {
|
||||
dirname = dirname.substring(0, dirname.length-6);
|
||||
} else if (dirname == 'index/') {
|
||||
dirname = '';
|
||||
}
|
||||
requestUrl = DOCUMENTATION_OPTIONS.URL_ROOT + dirname;
|
||||
linkUrl = requestUrl;
|
||||
|
||||
} else {
|
||||
// normal html builders
|
||||
requestUrl = DOCUMENTATION_OPTIONS.URL_ROOT + item[0] + DOCUMENTATION_OPTIONS.FILE_SUFFIX;
|
||||
linkUrl = item[0] + DOCUMENTATION_OPTIONS.LINK_SUFFIX;
|
||||
}
|
||||
listItem.append($('<a/>').attr('href',
|
||||
linkUrl +
|
||||
highlightstring + item[2]).html(item[1]));
|
||||
if (item[3]) {
|
||||
listItem.append($('<span> (' + item[3] + ')</span>'));
|
||||
Search.output.append(listItem);
|
||||
listItem.slideDown(5, function() {
|
||||
displayNextItem();
|
||||
});
|
||||
} else if (DOCUMENTATION_OPTIONS.HAS_SOURCE) {
|
||||
$.ajax({url: requestUrl,
|
||||
dataType: "text",
|
||||
complete: function(jqxhr, textstatus) {
|
||||
var data = jqxhr.responseText;
|
||||
if (data !== '' && data !== undefined) {
|
||||
listItem.append(Search.makeSearchSummary(data, searchterms, hlterms));
|
||||
}
|
||||
Search.output.append(listItem);
|
||||
listItem.slideDown(5, function() {
|
||||
displayNextItem();
|
||||
});
|
||||
}});
|
||||
} else {
|
||||
// no source available, just display title
|
||||
Search.output.append(listItem);
|
||||
listItem.slideDown(5, function() {
|
||||
displayNextItem();
|
||||
});
|
||||
}
|
||||
}
|
||||
// search finished, update title and status message
|
||||
else {
|
||||
Search.stopPulse();
|
||||
Search.title.text(_('Search Results'));
|
||||
if (!resultCount)
|
||||
Search.status.text(_('Your search did not match any documents. Please make sure that all words are spelled correctly and that you\'ve selected enough categories.'));
|
||||
else
|
||||
Search.status.text(_('Search finished, found %s page(s) matching the search query.').replace('%s', resultCount));
|
||||
Search.status.fadeIn(500);
|
||||
}
|
||||
}
|
||||
displayNextItem();
|
||||
},
|
||||
|
||||
/**
|
||||
* search for object names
|
||||
*/
|
||||
performObjectSearch : function(object, otherterms) {
|
||||
var filenames = this._index.filenames;
|
||||
var docnames = this._index.docnames;
|
||||
var objects = this._index.objects;
|
||||
var objnames = this._index.objnames;
|
||||
var titles = this._index.titles;
|
||||
|
||||
var i;
|
||||
var results = [];
|
||||
|
||||
for (var prefix in objects) {
|
||||
for (var name in objects[prefix]) {
|
||||
var fullname = (prefix ? prefix + '.' : '') + name;
|
||||
var fullnameLower = fullname.toLowerCase()
|
||||
if (fullnameLower.indexOf(object) > -1) {
|
||||
var score = 0;
|
||||
var parts = fullnameLower.split('.');
|
||||
// check for different match types: exact matches of full name or
|
||||
// "last name" (i.e. last dotted part)
|
||||
if (fullnameLower == object || parts[parts.length - 1] == object) {
|
||||
score += Scorer.objNameMatch;
|
||||
// matches in last name
|
||||
} else if (parts[parts.length - 1].indexOf(object) > -1) {
|
||||
score += Scorer.objPartialMatch;
|
||||
}
|
||||
var match = objects[prefix][name];
|
||||
var objname = objnames[match[1]][2];
|
||||
var title = titles[match[0]];
|
||||
// If more than one term searched for, we require other words to be
|
||||
// found in the name/title/description
|
||||
if (otherterms.length > 0) {
|
||||
var haystack = (prefix + ' ' + name + ' ' +
|
||||
objname + ' ' + title).toLowerCase();
|
||||
var allfound = true;
|
||||
for (i = 0; i < otherterms.length; i++) {
|
||||
if (haystack.indexOf(otherterms[i]) == -1) {
|
||||
allfound = false;
|
||||
break;
|
||||
}
|
||||
}
|
||||
if (!allfound) {
|
||||
continue;
|
||||
}
|
||||
}
|
||||
var descr = objname + _(', in ') + title;
|
||||
|
||||
var anchor = match[3];
|
||||
if (anchor === '')
|
||||
anchor = fullname;
|
||||
else if (anchor == '-')
|
||||
anchor = objnames[match[1]][1] + '-' + fullname;
|
||||
// add custom score for some objects according to scorer
|
||||
if (Scorer.objPrio.hasOwnProperty(match[2])) {
|
||||
score += Scorer.objPrio[match[2]];
|
||||
} else {
|
||||
score += Scorer.objPrioDefault;
|
||||
}
|
||||
results.push([docnames[match[0]], fullname, '#'+anchor, descr, score, filenames[match[0]]]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return results;
|
||||
},
|
||||
|
||||
/**
|
||||
* search for full-text terms in the index
|
||||
*/
|
||||
performTermsSearch : function(searchterms, excluded, terms, titleterms) {
|
||||
var docnames = this._index.docnames;
|
||||
var filenames = this._index.filenames;
|
||||
var titles = this._index.titles;
|
||||
|
||||
var i, j, file;
|
||||
var fileMap = {};
|
||||
var scoreMap = {};
|
||||
var results = [];
|
||||
|
||||
// perform the search on the required terms
|
||||
for (i = 0; i < searchterms.length; i++) {
|
||||
var word = searchterms[i];
|
||||
var files = [];
|
||||
var _o = [
|
||||
{files: terms[word], score: Scorer.term},
|
||||
{files: titleterms[word], score: Scorer.title}
|
||||
];
|
||||
// add support for partial matches
|
||||
if (word.length > 2) {
|
||||
for (var w in terms) {
|
||||
if (w.match(word) && !terms[word]) {
|
||||
_o.push({files: terms[w], score: Scorer.partialTerm})
|
||||
}
|
||||
}
|
||||
for (var w in titleterms) {
|
||||
if (w.match(word) && !titleterms[word]) {
|
||||
_o.push({files: titleterms[w], score: Scorer.partialTitle})
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// no match but word was a required one
|
||||
if ($u.every(_o, function(o){return o.files === undefined;})) {
|
||||
break;
|
||||
}
|
||||
// found search word in contents
|
||||
$u.each(_o, function(o) {
|
||||
var _files = o.files;
|
||||
if (_files === undefined)
|
||||
return
|
||||
|
||||
if (_files.length === undefined)
|
||||
_files = [_files];
|
||||
files = files.concat(_files);
|
||||
|
||||
// set score for the word in each file to Scorer.term
|
||||
for (j = 0; j < _files.length; j++) {
|
||||
file = _files[j];
|
||||
if (!(file in scoreMap))
|
||||
scoreMap[file] = {};
|
||||
scoreMap[file][word] = o.score;
|
||||
}
|
||||
});
|
||||
|
||||
// create the mapping
|
||||
for (j = 0; j < files.length; j++) {
|
||||
file = files[j];
|
||||
if (file in fileMap && fileMap[file].indexOf(word) === -1)
|
||||
fileMap[file].push(word);
|
||||
else
|
||||
fileMap[file] = [word];
|
||||
}
|
||||
}
|
||||
|
||||
// now check if the files don't contain excluded terms
|
||||
for (file in fileMap) {
|
||||
var valid = true;
|
||||
|
||||
// check if all requirements are matched
|
||||
var filteredTermCount = // as search terms with length < 3 are discarded: ignore
|
||||
searchterms.filter(function(term){return term.length > 2}).length
|
||||
if (
|
||||
fileMap[file].length != searchterms.length &&
|
||||
fileMap[file].length != filteredTermCount
|
||||
) continue;
|
||||
|
||||
// ensure that none of the excluded terms is in the search result
|
||||
for (i = 0; i < excluded.length; i++) {
|
||||
if (terms[excluded[i]] == file ||
|
||||
titleterms[excluded[i]] == file ||
|
||||
$u.contains(terms[excluded[i]] || [], file) ||
|
||||
$u.contains(titleterms[excluded[i]] || [], file)) {
|
||||
valid = false;
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
// if we have still a valid result we can add it to the result list
|
||||
if (valid) {
|
||||
// select one (max) score for the file.
|
||||
// for better ranking, we should calculate ranking by using words statistics like basic tf-idf...
|
||||
var score = $u.max($u.map(fileMap[file], function(w){return scoreMap[file][w]}));
|
||||
results.push([docnames[file], titles[file], '', null, score, filenames[file]]);
|
||||
}
|
||||
}
|
||||
return results;
|
||||
},
|
||||
|
||||
/**
|
||||
* helper function to return a node containing the
|
||||
* search summary for a given text. keywords is a list
|
||||
* of stemmed words, hlwords is the list of normal, unstemmed
|
||||
* words. the first one is used to find the occurrence, the
|
||||
* latter for highlighting it.
|
||||
*/
|
||||
makeSearchSummary : function(htmlText, keywords, hlwords) {
|
||||
var text = Search.htmlToText(htmlText);
|
||||
var textLower = text.toLowerCase();
|
||||
var start = 0;
|
||||
$.each(keywords, function() {
|
||||
var i = textLower.indexOf(this.toLowerCase());
|
||||
if (i > -1)
|
||||
start = i;
|
||||
});
|
||||
start = Math.max(start - 120, 0);
|
||||
var excerpt = ((start > 0) ? '...' : '') +
|
||||
$.trim(text.substr(start, 240)) +
|
||||
((start + 240 - text.length) ? '...' : '');
|
||||
var rv = $('<div class="context"></div>').text(excerpt);
|
||||
$.each(hlwords, function() {
|
||||
rv = rv.highlightText(this, 'highlighted');
|
||||
});
|
||||
return rv;
|
||||
}
|
||||
};
|
||||
|
||||
$(document).ready(function() {
|
||||
Search.init();
|
||||
});
|
||||
@ -0,0 +1,159 @@
|
||||
/*
|
||||
* sidebar.js
|
||||
* ~~~~~~~~~~
|
||||
*
|
||||
* This script makes the Sphinx sidebar collapsible.
|
||||
*
|
||||
* .sphinxsidebar contains .sphinxsidebarwrapper. This script adds
|
||||
* in .sphixsidebar, after .sphinxsidebarwrapper, the #sidebarbutton
|
||||
* used to collapse and expand the sidebar.
|
||||
*
|
||||
* When the sidebar is collapsed the .sphinxsidebarwrapper is hidden
|
||||
* and the width of the sidebar and the margin-left of the document
|
||||
* are decreased. When the sidebar is expanded the opposite happens.
|
||||
* This script saves a per-browser/per-session cookie used to
|
||||
* remember the position of the sidebar among the pages.
|
||||
* Once the browser is closed the cookie is deleted and the position
|
||||
* reset to the default (expanded).
|
||||
*
|
||||
* :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS.
|
||||
* :license: BSD, see LICENSE for details.
|
||||
*
|
||||
*/
|
||||
|
||||
$(function() {
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
// global elements used by the functions.
|
||||
// the 'sidebarbutton' element is defined as global after its
|
||||
// creation, in the add_sidebar_button function
|
||||
var bodywrapper = $('.bodywrapper');
|
||||
var sidebar = $('.sphinxsidebar');
|
||||
var sidebarwrapper = $('.sphinxsidebarwrapper');
|
||||
|
||||
// for some reason, the document has no sidebar; do not run into errors
|
||||
if (!sidebar.length) return;
|
||||
|
||||
// original margin-left of the bodywrapper and width of the sidebar
|
||||
// with the sidebar expanded
|
||||
var bw_margin_expanded = bodywrapper.css('margin-left');
|
||||
var ssb_width_expanded = sidebar.width();
|
||||
|
||||
// margin-left of the bodywrapper and width of the sidebar
|
||||
// with the sidebar collapsed
|
||||
var bw_margin_collapsed = '.8em';
|
||||
var ssb_width_collapsed = '.8em';
|
||||
|
||||
// colors used by the current theme
|
||||
var dark_color = $('.related').css('background-color');
|
||||
var light_color = $('.document').css('background-color');
|
||||
|
||||
function sidebar_is_collapsed() {
|
||||
return sidebarwrapper.is(':not(:visible)');
|
||||
}
|
||||
|
||||
function toggle_sidebar() {
|
||||
if (sidebar_is_collapsed())
|
||||
expand_sidebar();
|
||||
else
|
||||
collapse_sidebar();
|
||||
}
|
||||
|
||||
function collapse_sidebar() {
|
||||
sidebarwrapper.hide();
|
||||
sidebar.css('width', ssb_width_collapsed);
|
||||
bodywrapper.css('margin-left', bw_margin_collapsed);
|
||||
sidebarbutton.css({
|
||||
'margin-left': '0',
|
||||
'height': bodywrapper.height()
|
||||
});
|
||||
sidebarbutton.find('span').text('»');
|
||||
sidebarbutton.attr('title', _('Expand sidebar'));
|
||||
document.cookie = 'sidebar=collapsed';
|
||||
}
|
||||
|
||||
function expand_sidebar() {
|
||||
bodywrapper.css('margin-left', bw_margin_expanded);
|
||||
sidebar.css('width', ssb_width_expanded);
|
||||
sidebarwrapper.show();
|
||||
sidebarbutton.css({
|
||||
'margin-left': ssb_width_expanded-12,
|
||||
'height': bodywrapper.height()
|
||||
});
|
||||
sidebarbutton.find('span').text('«');
|
||||
sidebarbutton.attr('title', _('Collapse sidebar'));
|
||||
document.cookie = 'sidebar=expanded';
|
||||
}
|
||||
|
||||
function add_sidebar_button() {
|
||||
sidebarwrapper.css({
|
||||
'float': 'left',
|
||||
'margin-right': '0',
|
||||
'width': ssb_width_expanded - 28
|
||||
});
|
||||
// create the button
|
||||
sidebar.append(
|
||||
'<div id="sidebarbutton"><span>«</span></div>'
|
||||
);
|
||||
var sidebarbutton = $('#sidebarbutton');
|
||||
light_color = sidebarbutton.css('background-color');
|
||||
// find the height of the viewport to center the '<<' in the page
|
||||
var viewport_height;
|
||||
if (window.innerHeight)
|
||||
viewport_height = window.innerHeight;
|
||||
else
|
||||
viewport_height = $(window).height();
|
||||
sidebarbutton.find('span').css({
|
||||
'display': 'block',
|
||||
'margin-top': (viewport_height - sidebar.position().top - 20) / 2
|
||||
});
|
||||
|
||||
sidebarbutton.click(toggle_sidebar);
|
||||
sidebarbutton.attr('title', _('Collapse sidebar'));
|
||||
sidebarbutton.css({
|
||||
'color': '#FFFFFF',
|
||||
'border-left': '1px solid ' + dark_color,
|
||||
'font-size': '1.2em',
|
||||
'cursor': 'pointer',
|
||||
'height': bodywrapper.height(),
|
||||
'padding-top': '1px',
|
||||
'margin-left': ssb_width_expanded - 12
|
||||
});
|
||||
|
||||
sidebarbutton.hover(
|
||||
function () {
|
||||
$(this).css('background-color', dark_color);
|
||||
},
|
||||
function () {
|
||||
$(this).css('background-color', light_color);
|
||||
}
|
||||
);
|
||||
}
|
||||
|
||||
function set_position_from_cookie() {
|
||||
if (!document.cookie)
|
||||
return;
|
||||
var items = document.cookie.split(';');
|
||||
for(var k=0; k<items.length; k++) {
|
||||
var key_val = items[k].split('=');
|
||||
var key = key_val[0].replace(/ /, ""); // strip leading spaces
|
||||
if (key == 'sidebar') {
|
||||
var value = key_val[1];
|
||||
if ((value == 'collapsed') && (!sidebar_is_collapsed()))
|
||||
collapse_sidebar();
|
||||
else if ((value == 'expanded') && (sidebar_is_collapsed()))
|
||||
expand_sidebar();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
add_sidebar_button();
|
||||
var sidebarbutton = $('#sidebarbutton');
|
||||
set_position_from_cookie();
|
||||
});
|
||||
@ -0,0 +1,999 @@
|
||||
// Underscore.js 1.3.1
|
||||
// (c) 2009-2012 Jeremy Ashkenas, DocumentCloud Inc.
|
||||
// Underscore is freely distributable under the MIT license.
|
||||
// Portions of Underscore are inspired or borrowed from Prototype,
|
||||
// Oliver Steele's Functional, and John Resig's Micro-Templating.
|
||||
// For all details and documentation:
|
||||
// http://documentcloud.github.com/underscore
|
||||
|
||||
(function() {
|
||||
|
||||
// Baseline setup
|
||||
// --------------
|
||||
|
||||
// Establish the root object, `window` in the browser, or `global` on the server.
|
||||
var root = this;
|
||||
|
||||
// Save the previous value of the `_` variable.
|
||||
var previousUnderscore = root._;
|
||||
|
||||
// Establish the object that gets returned to break out of a loop iteration.
|
||||
var breaker = {};
|
||||
|
||||
// Save bytes in the minified (but not gzipped) version:
|
||||
var ArrayProto = Array.prototype, ObjProto = Object.prototype, FuncProto = Function.prototype;
|
||||
|
||||
// Create quick reference variables for speed access to core prototypes.
|
||||
var slice = ArrayProto.slice,
|
||||
unshift = ArrayProto.unshift,
|
||||
toString = ObjProto.toString,
|
||||
hasOwnProperty = ObjProto.hasOwnProperty;
|
||||
|
||||
// All **ECMAScript 5** native function implementations that we hope to use
|
||||
// are declared here.
|
||||
var
|
||||
nativeForEach = ArrayProto.forEach,
|
||||
nativeMap = ArrayProto.map,
|
||||
nativeReduce = ArrayProto.reduce,
|
||||
nativeReduceRight = ArrayProto.reduceRight,
|
||||
nativeFilter = ArrayProto.filter,
|
||||
nativeEvery = ArrayProto.every,
|
||||
nativeSome = ArrayProto.some,
|
||||
nativeIndexOf = ArrayProto.indexOf,
|
||||
nativeLastIndexOf = ArrayProto.lastIndexOf,
|
||||
nativeIsArray = Array.isArray,
|
||||
nativeKeys = Object.keys,
|
||||
nativeBind = FuncProto.bind;
|
||||
|
||||
// Create a safe reference to the Underscore object for use below.
|
||||
var _ = function(obj) { return new wrapper(obj); };
|
||||
|
||||
// Export the Underscore object for **Node.js**, with
|
||||
// backwards-compatibility for the old `require()` API. If we're in
|
||||
// the browser, add `_` as a global object via a string identifier,
|
||||
// for Closure Compiler "advanced" mode.
|
||||
if (typeof exports !== 'undefined') {
|
||||
if (typeof module !== 'undefined' && module.exports) {
|
||||
exports = module.exports = _;
|
||||
}
|
||||
exports._ = _;
|
||||
} else {
|
||||
root['_'] = _;
|
||||
}
|
||||
|
||||
// Current version.
|
||||
_.VERSION = '1.3.1';
|
||||
|
||||
// Collection Functions
|
||||
// --------------------
|
||||
|
||||
// The cornerstone, an `each` implementation, aka `forEach`.
|
||||
// Handles objects with the built-in `forEach`, arrays, and raw objects.
|
||||
// Delegates to **ECMAScript 5**'s native `forEach` if available.
|
||||
var each = _.each = _.forEach = function(obj, iterator, context) {
|
||||
if (obj == null) return;
|
||||
if (nativeForEach && obj.forEach === nativeForEach) {
|
||||
obj.forEach(iterator, context);
|
||||
} else if (obj.length === +obj.length) {
|
||||
for (var i = 0, l = obj.length; i < l; i++) {
|
||||
if (i in obj && iterator.call(context, obj[i], i, obj) === breaker) return;
|
||||
}
|
||||
} else {
|
||||
for (var key in obj) {
|
||||
if (_.has(obj, key)) {
|
||||
if (iterator.call(context, obj[key], key, obj) === breaker) return;
|
||||
}
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
// Return the results of applying the iterator to each element.
|
||||
// Delegates to **ECMAScript 5**'s native `map` if available.
|
||||
_.map = _.collect = function(obj, iterator, context) {
|
||||
var results = [];
|
||||
if (obj == null) return results;
|
||||
if (nativeMap && obj.map === nativeMap) return obj.map(iterator, context);
|
||||
each(obj, function(value, index, list) {
|
||||
results[results.length] = iterator.call(context, value, index, list);
|
||||
});
|
||||
if (obj.length === +obj.length) results.length = obj.length;
|
||||
return results;
|
||||
};
|
||||
|
||||
// **Reduce** builds up a single result from a list of values, aka `inject`,
|
||||
// or `foldl`. Delegates to **ECMAScript 5**'s native `reduce` if available.
|
||||
_.reduce = _.foldl = _.inject = function(obj, iterator, memo, context) {
|
||||
var initial = arguments.length > 2;
|
||||
if (obj == null) obj = [];
|
||||
if (nativeReduce && obj.reduce === nativeReduce) {
|
||||
if (context) iterator = _.bind(iterator, context);
|
||||
return initial ? obj.reduce(iterator, memo) : obj.reduce(iterator);
|
||||
}
|
||||
each(obj, function(value, index, list) {
|
||||
if (!initial) {
|
||||
memo = value;
|
||||
initial = true;
|
||||
} else {
|
||||
memo = iterator.call(context, memo, value, index, list);
|
||||
}
|
||||
});
|
||||
if (!initial) throw new TypeError('Reduce of empty array with no initial value');
|
||||
return memo;
|
||||
};
|
||||
|
||||
// The right-associative version of reduce, also known as `foldr`.
|
||||
// Delegates to **ECMAScript 5**'s native `reduceRight` if available.
|
||||
_.reduceRight = _.foldr = function(obj, iterator, memo, context) {
|
||||
var initial = arguments.length > 2;
|
||||
if (obj == null) obj = [];
|
||||
if (nativeReduceRight && obj.reduceRight === nativeReduceRight) {
|
||||
if (context) iterator = _.bind(iterator, context);
|
||||
return initial ? obj.reduceRight(iterator, memo) : obj.reduceRight(iterator);
|
||||
}
|
||||
var reversed = _.toArray(obj).reverse();
|
||||
if (context && !initial) iterator = _.bind(iterator, context);
|
||||
return initial ? _.reduce(reversed, iterator, memo, context) : _.reduce(reversed, iterator);
|
||||
};
|
||||
|
||||
// Return the first value which passes a truth test. Aliased as `detect`.
|
||||
_.find = _.detect = function(obj, iterator, context) {
|
||||
var result;
|
||||
any(obj, function(value, index, list) {
|
||||
if (iterator.call(context, value, index, list)) {
|
||||
result = value;
|
||||
return true;
|
||||
}
|
||||
});
|
||||
return result;
|
||||
};
|
||||
|
||||
// Return all the elements that pass a truth test.
|
||||
// Delegates to **ECMAScript 5**'s native `filter` if available.
|
||||
// Aliased as `select`.
|
||||
_.filter = _.select = function(obj, iterator, context) {
|
||||
var results = [];
|
||||
if (obj == null) return results;
|
||||
if (nativeFilter && obj.filter === nativeFilter) return obj.filter(iterator, context);
|
||||
each(obj, function(value, index, list) {
|
||||
if (iterator.call(context, value, index, list)) results[results.length] = value;
|
||||
});
|
||||
return results;
|
||||
};
|
||||
|
||||
// Return all the elements for which a truth test fails.
|
||||
_.reject = function(obj, iterator, context) {
|
||||
var results = [];
|
||||
if (obj == null) return results;
|
||||
each(obj, function(value, index, list) {
|
||||
if (!iterator.call(context, value, index, list)) results[results.length] = value;
|
||||
});
|
||||
return results;
|
||||
};
|
||||
|
||||
// Determine whether all of the elements match a truth test.
|
||||
// Delegates to **ECMAScript 5**'s native `every` if available.
|
||||
// Aliased as `all`.
|
||||
_.every = _.all = function(obj, iterator, context) {
|
||||
var result = true;
|
||||
if (obj == null) return result;
|
||||
if (nativeEvery && obj.every === nativeEvery) return obj.every(iterator, context);
|
||||
each(obj, function(value, index, list) {
|
||||
if (!(result = result && iterator.call(context, value, index, list))) return breaker;
|
||||
});
|
||||
return result;
|
||||
};
|
||||
|
||||
// Determine if at least one element in the object matches a truth test.
|
||||
// Delegates to **ECMAScript 5**'s native `some` if available.
|
||||
// Aliased as `any`.
|
||||
var any = _.some = _.any = function(obj, iterator, context) {
|
||||
iterator || (iterator = _.identity);
|
||||
var result = false;
|
||||
if (obj == null) return result;
|
||||
if (nativeSome && obj.some === nativeSome) return obj.some(iterator, context);
|
||||
each(obj, function(value, index, list) {
|
||||
if (result || (result = iterator.call(context, value, index, list))) return breaker;
|
||||
});
|
||||
return !!result;
|
||||
};
|
||||
|
||||
// Determine if a given value is included in the array or object using `===`.
|
||||
// Aliased as `contains`.
|
||||
_.include = _.contains = function(obj, target) {
|
||||
var found = false;
|
||||
if (obj == null) return found;
|
||||
if (nativeIndexOf && obj.indexOf === nativeIndexOf) return obj.indexOf(target) != -1;
|
||||
found = any(obj, function(value) {
|
||||
return value === target;
|
||||
});
|
||||
return found;
|
||||
};
|
||||
|
||||
// Invoke a method (with arguments) on every item in a collection.
|
||||
_.invoke = function(obj, method) {
|
||||
var args = slice.call(arguments, 2);
|
||||
return _.map(obj, function(value) {
|
||||
return (_.isFunction(method) ? method || value : value[method]).apply(value, args);
|
||||
});
|
||||
};
|
||||
|
||||
// Convenience version of a common use case of `map`: fetching a property.
|
||||
_.pluck = function(obj, key) {
|
||||
return _.map(obj, function(value){ return value[key]; });
|
||||
};
|
||||
|
||||
// Return the maximum element or (element-based computation).
|
||||
_.max = function(obj, iterator, context) {
|
||||
if (!iterator && _.isArray(obj)) return Math.max.apply(Math, obj);
|
||||
if (!iterator && _.isEmpty(obj)) return -Infinity;
|
||||
var result = {computed : -Infinity};
|
||||
each(obj, function(value, index, list) {
|
||||
var computed = iterator ? iterator.call(context, value, index, list) : value;
|
||||
computed >= result.computed && (result = {value : value, computed : computed});
|
||||
});
|
||||
return result.value;
|
||||
};
|
||||
|
||||
// Return the minimum element (or element-based computation).
|
||||
_.min = function(obj, iterator, context) {
|
||||
if (!iterator && _.isArray(obj)) return Math.min.apply(Math, obj);
|
||||
if (!iterator && _.isEmpty(obj)) return Infinity;
|
||||
var result = {computed : Infinity};
|
||||
each(obj, function(value, index, list) {
|
||||
var computed = iterator ? iterator.call(context, value, index, list) : value;
|
||||
computed < result.computed && (result = {value : value, computed : computed});
|
||||
});
|
||||
return result.value;
|
||||
};
|
||||
|
||||
// Shuffle an array.
|
||||
_.shuffle = function(obj) {
|
||||
var shuffled = [], rand;
|
||||
each(obj, function(value, index, list) {
|
||||
if (index == 0) {
|
||||
shuffled[0] = value;
|
||||
} else {
|
||||
rand = Math.floor(Math.random() * (index + 1));
|
||||
shuffled[index] = shuffled[rand];
|
||||
shuffled[rand] = value;
|
||||
}
|
||||
});
|
||||
return shuffled;
|
||||
};
|
||||
|
||||
// Sort the object's values by a criterion produced by an iterator.
|
||||
_.sortBy = function(obj, iterator, context) {
|
||||
return _.pluck(_.map(obj, function(value, index, list) {
|
||||
return {
|
||||
value : value,
|
||||
criteria : iterator.call(context, value, index, list)
|
||||
};
|
||||
}).sort(function(left, right) {
|
||||
var a = left.criteria, b = right.criteria;
|
||||
return a < b ? -1 : a > b ? 1 : 0;
|
||||
}), 'value');
|
||||
};
|
||||
|
||||
// Groups the object's values by a criterion. Pass either a string attribute
|
||||
// to group by, or a function that returns the criterion.
|
||||
_.groupBy = function(obj, val) {
|
||||
var result = {};
|
||||
var iterator = _.isFunction(val) ? val : function(obj) { return obj[val]; };
|
||||
each(obj, function(value, index) {
|
||||
var key = iterator(value, index);
|
||||
(result[key] || (result[key] = [])).push(value);
|
||||
});
|
||||
return result;
|
||||
};
|
||||
|
||||
// Use a comparator function to figure out at what index an object should
|
||||
// be inserted so as to maintain order. Uses binary search.
|
||||
_.sortedIndex = function(array, obj, iterator) {
|
||||
iterator || (iterator = _.identity);
|
||||
var low = 0, high = array.length;
|
||||
while (low < high) {
|
||||
var mid = (low + high) >> 1;
|
||||
iterator(array[mid]) < iterator(obj) ? low = mid + 1 : high = mid;
|
||||
}
|
||||
return low;
|
||||
};
|
||||
|
||||
// Safely convert anything iterable into a real, live array.
|
||||
_.toArray = function(iterable) {
|
||||
if (!iterable) return [];
|
||||
if (iterable.toArray) return iterable.toArray();
|
||||
if (_.isArray(iterable)) return slice.call(iterable);
|
||||
if (_.isArguments(iterable)) return slice.call(iterable);
|
||||
return _.values(iterable);
|
||||
};
|
||||
|
||||
// Return the number of elements in an object.
|
||||
_.size = function(obj) {
|
||||
return _.toArray(obj).length;
|
||||
};
|
||||
|
||||
// Array Functions
|
||||
// ---------------
|
||||
|
||||
// Get the first element of an array. Passing **n** will return the first N
|
||||
// values in the array. Aliased as `head`. The **guard** check allows it to work
|
||||
// with `_.map`.
|
||||
_.first = _.head = function(array, n, guard) {
|
||||
return (n != null) && !guard ? slice.call(array, 0, n) : array[0];
|
||||
};
|
||||
|
||||
// Returns everything but the last entry of the array. Especcialy useful on
|
||||
// the arguments object. Passing **n** will return all the values in
|
||||
// the array, excluding the last N. The **guard** check allows it to work with
|
||||
// `_.map`.
|
||||
_.initial = function(array, n, guard) {
|
||||
return slice.call(array, 0, array.length - ((n == null) || guard ? 1 : n));
|
||||
};
|
||||
|
||||
// Get the last element of an array. Passing **n** will return the last N
|
||||
// values in the array. The **guard** check allows it to work with `_.map`.
|
||||
_.last = function(array, n, guard) {
|
||||
if ((n != null) && !guard) {
|
||||
return slice.call(array, Math.max(array.length - n, 0));
|
||||
} else {
|
||||
return array[array.length - 1];
|
||||
}
|
||||
};
|
||||
|
||||
// Returns everything but the first entry of the array. Aliased as `tail`.
|
||||
// Especially useful on the arguments object. Passing an **index** will return
|
||||
// the rest of the values in the array from that index onward. The **guard**
|
||||
// check allows it to work with `_.map`.
|
||||
_.rest = _.tail = function(array, index, guard) {
|
||||
return slice.call(array, (index == null) || guard ? 1 : index);
|
||||
};
|
||||
|
||||
// Trim out all falsy values from an array.
|
||||
_.compact = function(array) {
|
||||
return _.filter(array, function(value){ return !!value; });
|
||||
};
|
||||
|
||||
// Return a completely flattened version of an array.
|
||||
_.flatten = function(array, shallow) {
|
||||
return _.reduce(array, function(memo, value) {
|
||||
if (_.isArray(value)) return memo.concat(shallow ? value : _.flatten(value));
|
||||
memo[memo.length] = value;
|
||||
return memo;
|
||||
}, []);
|
||||
};
|
||||
|
||||
// Return a version of the array that does not contain the specified value(s).
|
||||
_.without = function(array) {
|
||||
return _.difference(array, slice.call(arguments, 1));
|
||||
};
|
||||
|
||||
// Produce a duplicate-free version of the array. If the array has already
|
||||
// been sorted, you have the option of using a faster algorithm.
|
||||
// Aliased as `unique`.
|
||||
_.uniq = _.unique = function(array, isSorted, iterator) {
|
||||
var initial = iterator ? _.map(array, iterator) : array;
|
||||
var result = [];
|
||||
_.reduce(initial, function(memo, el, i) {
|
||||
if (0 == i || (isSorted === true ? _.last(memo) != el : !_.include(memo, el))) {
|
||||
memo[memo.length] = el;
|
||||
result[result.length] = array[i];
|
||||
}
|
||||
return memo;
|
||||
}, []);
|
||||
return result;
|
||||
};
|
||||
|
||||
// Produce an array that contains the union: each distinct element from all of
|
||||
// the passed-in arrays.
|
||||
_.union = function() {
|
||||
return _.uniq(_.flatten(arguments, true));
|
||||
};
|
||||
|
||||
// Produce an array that contains every item shared between all the
|
||||
// passed-in arrays. (Aliased as "intersect" for back-compat.)
|
||||
_.intersection = _.intersect = function(array) {
|
||||
var rest = slice.call(arguments, 1);
|
||||
return _.filter(_.uniq(array), function(item) {
|
||||
return _.every(rest, function(other) {
|
||||
return _.indexOf(other, item) >= 0;
|
||||
});
|
||||
});
|
||||
};
|
||||
|
||||
// Take the difference between one array and a number of other arrays.
|
||||
// Only the elements present in just the first array will remain.
|
||||
_.difference = function(array) {
|
||||
var rest = _.flatten(slice.call(arguments, 1));
|
||||
return _.filter(array, function(value){ return !_.include(rest, value); });
|
||||
};
|
||||
|
||||
// Zip together multiple lists into a single array -- elements that share
|
||||
// an index go together.
|
||||
_.zip = function() {
|
||||
var args = slice.call(arguments);
|
||||
var length = _.max(_.pluck(args, 'length'));
|
||||
var results = new Array(length);
|
||||
for (var i = 0; i < length; i++) results[i] = _.pluck(args, "" + i);
|
||||
return results;
|
||||
};
|
||||
|
||||
// If the browser doesn't supply us with indexOf (I'm looking at you, **MSIE**),
|
||||
// we need this function. Return the position of the first occurrence of an
|
||||
// item in an array, or -1 if the item is not included in the array.
|
||||
// Delegates to **ECMAScript 5**'s native `indexOf` if available.
|
||||
// If the array is large and already in sort order, pass `true`
|
||||
// for **isSorted** to use binary search.
|
||||
_.indexOf = function(array, item, isSorted) {
|
||||
if (array == null) return -1;
|
||||
var i, l;
|
||||
if (isSorted) {
|
||||
i = _.sortedIndex(array, item);
|
||||
return array[i] === item ? i : -1;
|
||||
}
|
||||
if (nativeIndexOf && array.indexOf === nativeIndexOf) return array.indexOf(item);
|
||||
for (i = 0, l = array.length; i < l; i++) if (i in array && array[i] === item) return i;
|
||||
return -1;
|
||||
};
|
||||
|
||||
// Delegates to **ECMAScript 5**'s native `lastIndexOf` if available.
|
||||
_.lastIndexOf = function(array, item) {
|
||||
if (array == null) return -1;
|
||||
if (nativeLastIndexOf && array.lastIndexOf === nativeLastIndexOf) return array.lastIndexOf(item);
|
||||
var i = array.length;
|
||||
while (i--) if (i in array && array[i] === item) return i;
|
||||
return -1;
|
||||
};
|
||||
|
||||
// Generate an integer Array containing an arithmetic progression. A port of
|
||||
// the native Python `range()` function. See
|
||||
// [the Python documentation](http://docs.python.org/library/functions.html#range).
|
||||
_.range = function(start, stop, step) {
|
||||
if (arguments.length <= 1) {
|
||||
stop = start || 0;
|
||||
start = 0;
|
||||
}
|
||||
step = arguments[2] || 1;
|
||||
|
||||
var len = Math.max(Math.ceil((stop - start) / step), 0);
|
||||
var idx = 0;
|
||||
var range = new Array(len);
|
||||
|
||||
while(idx < len) {
|
||||
range[idx++] = start;
|
||||
start += step;
|
||||
}
|
||||
|
||||
return range;
|
||||
};
|
||||
|
||||
// Function (ahem) Functions
|
||||
// ------------------
|
||||
|
||||
// Reusable constructor function for prototype setting.
|
||||
var ctor = function(){};
|
||||
|
||||
// Create a function bound to a given object (assigning `this`, and arguments,
|
||||
// optionally). Binding with arguments is also known as `curry`.
|
||||
// Delegates to **ECMAScript 5**'s native `Function.bind` if available.
|
||||
// We check for `func.bind` first, to fail fast when `func` is undefined.
|
||||
_.bind = function bind(func, context) {
|
||||
var bound, args;
|
||||
if (func.bind === nativeBind && nativeBind) return nativeBind.apply(func, slice.call(arguments, 1));
|
||||
if (!_.isFunction(func)) throw new TypeError;
|
||||
args = slice.call(arguments, 2);
|
||||
return bound = function() {
|
||||
if (!(this instanceof bound)) return func.apply(context, args.concat(slice.call(arguments)));
|
||||
ctor.prototype = func.prototype;
|
||||
var self = new ctor;
|
||||
var result = func.apply(self, args.concat(slice.call(arguments)));
|
||||
if (Object(result) === result) return result;
|
||||
return self;
|
||||
};
|
||||
};
|
||||
|
||||
// Bind all of an object's methods to that object. Useful for ensuring that
|
||||
// all callbacks defined on an object belong to it.
|
||||
_.bindAll = function(obj) {
|
||||
var funcs = slice.call(arguments, 1);
|
||||
if (funcs.length == 0) funcs = _.functions(obj);
|
||||
each(funcs, function(f) { obj[f] = _.bind(obj[f], obj); });
|
||||
return obj;
|
||||
};
|
||||
|
||||
// Memoize an expensive function by storing its results.
|
||||
_.memoize = function(func, hasher) {
|
||||
var memo = {};
|
||||
hasher || (hasher = _.identity);
|
||||
return function() {
|
||||
var key = hasher.apply(this, arguments);
|
||||
return _.has(memo, key) ? memo[key] : (memo[key] = func.apply(this, arguments));
|
||||
};
|
||||
};
|
||||
|
||||
// Delays a function for the given number of milliseconds, and then calls
|
||||
// it with the arguments supplied.
|
||||
_.delay = function(func, wait) {
|
||||
var args = slice.call(arguments, 2);
|
||||
return setTimeout(function(){ return func.apply(func, args); }, wait);
|
||||
};
|
||||
|
||||
// Defers a function, scheduling it to run after the current call stack has
|
||||
// cleared.
|
||||
_.defer = function(func) {
|
||||
return _.delay.apply(_, [func, 1].concat(slice.call(arguments, 1)));
|
||||
};
|
||||
|
||||
// Returns a function, that, when invoked, will only be triggered at most once
|
||||
// during a given window of time.
|
||||
_.throttle = function(func, wait) {
|
||||
var context, args, timeout, throttling, more;
|
||||
var whenDone = _.debounce(function(){ more = throttling = false; }, wait);
|
||||
return function() {
|
||||
context = this; args = arguments;
|
||||
var later = function() {
|
||||
timeout = null;
|
||||
if (more) func.apply(context, args);
|
||||
whenDone();
|
||||
};
|
||||
if (!timeout) timeout = setTimeout(later, wait);
|
||||
if (throttling) {
|
||||
more = true;
|
||||
} else {
|
||||
func.apply(context, args);
|
||||
}
|
||||
whenDone();
|
||||
throttling = true;
|
||||
};
|
||||
};
|
||||
|
||||
// Returns a function, that, as long as it continues to be invoked, will not
|
||||
// be triggered. The function will be called after it stops being called for
|
||||
// N milliseconds.
|
||||
_.debounce = function(func, wait) {
|
||||
var timeout;
|
||||
return function() {
|
||||
var context = this, args = arguments;
|
||||
var later = function() {
|
||||
timeout = null;
|
||||
func.apply(context, args);
|
||||
};
|
||||
clearTimeout(timeout);
|
||||
timeout = setTimeout(later, wait);
|
||||
};
|
||||
};
|
||||
|
||||
// Returns a function that will be executed at most one time, no matter how
|
||||
// often you call it. Useful for lazy initialization.
|
||||
_.once = function(func) {
|
||||
var ran = false, memo;
|
||||
return function() {
|
||||
if (ran) return memo;
|
||||
ran = true;
|
||||
return memo = func.apply(this, arguments);
|
||||
};
|
||||
};
|
||||
|
||||
// Returns the first function passed as an argument to the second,
|
||||
// allowing you to adjust arguments, run code before and after, and
|
||||
// conditionally execute the original function.
|
||||
_.wrap = function(func, wrapper) {
|
||||
return function() {
|
||||
var args = [func].concat(slice.call(arguments, 0));
|
||||
return wrapper.apply(this, args);
|
||||
};
|
||||
};
|
||||
|
||||
// Returns a function that is the composition of a list of functions, each
|
||||
// consuming the return value of the function that follows.
|
||||
_.compose = function() {
|
||||
var funcs = arguments;
|
||||
return function() {
|
||||
var args = arguments;
|
||||
for (var i = funcs.length - 1; i >= 0; i--) {
|
||||
args = [funcs[i].apply(this, args)];
|
||||
}
|
||||
return args[0];
|
||||
};
|
||||
};
|
||||
|
||||
// Returns a function that will only be executed after being called N times.
|
||||
_.after = function(times, func) {
|
||||
if (times <= 0) return func();
|
||||
return function() {
|
||||
if (--times < 1) { return func.apply(this, arguments); }
|
||||
};
|
||||
};
|
||||
|
||||
// Object Functions
|
||||
// ----------------
|
||||
|
||||
// Retrieve the names of an object's properties.
|
||||
// Delegates to **ECMAScript 5**'s native `Object.keys`
|
||||
_.keys = nativeKeys || function(obj) {
|
||||
if (obj !== Object(obj)) throw new TypeError('Invalid object');
|
||||
var keys = [];
|
||||
for (var key in obj) if (_.has(obj, key)) keys[keys.length] = key;
|
||||
return keys;
|
||||
};
|
||||
|
||||
// Retrieve the values of an object's properties.
|
||||
_.values = function(obj) {
|
||||
return _.map(obj, _.identity);
|
||||
};
|
||||
|
||||
// Return a sorted list of the function names available on the object.
|
||||
// Aliased as `methods`
|
||||
_.functions = _.methods = function(obj) {
|
||||
var names = [];
|
||||
for (var key in obj) {
|
||||
if (_.isFunction(obj[key])) names.push(key);
|
||||
}
|
||||
return names.sort();
|
||||
};
|
||||
|
||||
// Extend a given object with all the properties in passed-in object(s).
|
||||
_.extend = function(obj) {
|
||||
each(slice.call(arguments, 1), function(source) {
|
||||
for (var prop in source) {
|
||||
obj[prop] = source[prop];
|
||||
}
|
||||
});
|
||||
return obj;
|
||||
};
|
||||
|
||||
// Fill in a given object with default properties.
|
||||
_.defaults = function(obj) {
|
||||
each(slice.call(arguments, 1), function(source) {
|
||||
for (var prop in source) {
|
||||
if (obj[prop] == null) obj[prop] = source[prop];
|
||||
}
|
||||
});
|
||||
return obj;
|
||||
};
|
||||
|
||||
// Create a (shallow-cloned) duplicate of an object.
|
||||
_.clone = function(obj) {
|
||||
if (!_.isObject(obj)) return obj;
|
||||
return _.isArray(obj) ? obj.slice() : _.extend({}, obj);
|
||||
};
|
||||
|
||||
// Invokes interceptor with the obj, and then returns obj.
|
||||
// The primary purpose of this method is to "tap into" a method chain, in
|
||||
// order to perform operations on intermediate results within the chain.
|
||||
_.tap = function(obj, interceptor) {
|
||||
interceptor(obj);
|
||||
return obj;
|
||||
};
|
||||
|
||||
// Internal recursive comparison function.
|
||||
function eq(a, b, stack) {
|
||||
// Identical objects are equal. `0 === -0`, but they aren't identical.
|
||||
// See the Harmony `egal` proposal: http://wiki.ecmascript.org/doku.php?id=harmony:egal.
|
||||
if (a === b) return a !== 0 || 1 / a == 1 / b;
|
||||
// A strict comparison is necessary because `null == undefined`.
|
||||
if (a == null || b == null) return a === b;
|
||||
// Unwrap any wrapped objects.
|
||||
if (a._chain) a = a._wrapped;
|
||||
if (b._chain) b = b._wrapped;
|
||||
// Invoke a custom `isEqual` method if one is provided.
|
||||
if (a.isEqual && _.isFunction(a.isEqual)) return a.isEqual(b);
|
||||
if (b.isEqual && _.isFunction(b.isEqual)) return b.isEqual(a);
|
||||
// Compare `[[Class]]` names.
|
||||
var className = toString.call(a);
|
||||
if (className != toString.call(b)) return false;
|
||||
switch (className) {
|
||||
// Strings, numbers, dates, and booleans are compared by value.
|
||||
case '[object String]':
|
||||
// Primitives and their corresponding object wrappers are equivalent; thus, `"5"` is
|
||||
// equivalent to `new String("5")`.
|
||||
return a == String(b);
|
||||
case '[object Number]':
|
||||
// `NaN`s are equivalent, but non-reflexive. An `egal` comparison is performed for
|
||||
// other numeric values.
|
||||
return a != +a ? b != +b : (a == 0 ? 1 / a == 1 / b : a == +b);
|
||||
case '[object Date]':
|
||||
case '[object Boolean]':
|
||||
// Coerce dates and booleans to numeric primitive values. Dates are compared by their
|
||||
// millisecond representations. Note that invalid dates with millisecond representations
|
||||
// of `NaN` are not equivalent.
|
||||
return +a == +b;
|
||||
// RegExps are compared by their source patterns and flags.
|
||||
case '[object RegExp]':
|
||||
return a.source == b.source &&
|
||||
a.global == b.global &&
|
||||
a.multiline == b.multiline &&
|
||||
a.ignoreCase == b.ignoreCase;
|
||||
}
|
||||
if (typeof a != 'object' || typeof b != 'object') return false;
|
||||
// Assume equality for cyclic structures. The algorithm for detecting cyclic
|
||||
// structures is adapted from ES 5.1 section 15.12.3, abstract operation `JO`.
|
||||
var length = stack.length;
|
||||
while (length--) {
|
||||
// Linear search. Performance is inversely proportional to the number of
|
||||
// unique nested structures.
|
||||
if (stack[length] == a) return true;
|
||||
}
|
||||
// Add the first object to the stack of traversed objects.
|
||||
stack.push(a);
|
||||
var size = 0, result = true;
|
||||
// Recursively compare objects and arrays.
|
||||
if (className == '[object Array]') {
|
||||
// Compare array lengths to determine if a deep comparison is necessary.
|
||||
size = a.length;
|
||||
result = size == b.length;
|
||||
if (result) {
|
||||
// Deep compare the contents, ignoring non-numeric properties.
|
||||
while (size--) {
|
||||
// Ensure commutative equality for sparse arrays.
|
||||
if (!(result = size in a == size in b && eq(a[size], b[size], stack))) break;
|
||||
}
|
||||
}
|
||||
} else {
|
||||
// Objects with different constructors are not equivalent.
|
||||
if ('constructor' in a != 'constructor' in b || a.constructor != b.constructor) return false;
|
||||
// Deep compare objects.
|
||||
for (var key in a) {
|
||||
if (_.has(a, key)) {
|
||||
// Count the expected number of properties.
|
||||
size++;
|
||||
// Deep compare each member.
|
||||
if (!(result = _.has(b, key) && eq(a[key], b[key], stack))) break;
|
||||
}
|
||||
}
|
||||
// Ensure that both objects contain the same number of properties.
|
||||
if (result) {
|
||||
for (key in b) {
|
||||
if (_.has(b, key) && !(size--)) break;
|
||||
}
|
||||
result = !size;
|
||||
}
|
||||
}
|
||||
// Remove the first object from the stack of traversed objects.
|
||||
stack.pop();
|
||||
return result;
|
||||
}
|
||||
|
||||
// Perform a deep comparison to check if two objects are equal.
|
||||
_.isEqual = function(a, b) {
|
||||
return eq(a, b, []);
|
||||
};
|
||||
|
||||
// Is a given array, string, or object empty?
|
||||
// An "empty" object has no enumerable own-properties.
|
||||
_.isEmpty = function(obj) {
|
||||
if (_.isArray(obj) || _.isString(obj)) return obj.length === 0;
|
||||
for (var key in obj) if (_.has(obj, key)) return false;
|
||||
return true;
|
||||
};
|
||||
|
||||
// Is a given value a DOM element?
|
||||
_.isElement = function(obj) {
|
||||
return !!(obj && obj.nodeType == 1);
|
||||
};
|
||||
|
||||
// Is a given value an array?
|
||||
// Delegates to ECMA5's native Array.isArray
|
||||
_.isArray = nativeIsArray || function(obj) {
|
||||
return toString.call(obj) == '[object Array]';
|
||||
};
|
||||
|
||||
// Is a given variable an object?
|
||||
_.isObject = function(obj) {
|
||||
return obj === Object(obj);
|
||||
};
|
||||
|
||||
// Is a given variable an arguments object?
|
||||
_.isArguments = function(obj) {
|
||||
return toString.call(obj) == '[object Arguments]';
|
||||
};
|
||||
if (!_.isArguments(arguments)) {
|
||||
_.isArguments = function(obj) {
|
||||
return !!(obj && _.has(obj, 'callee'));
|
||||
};
|
||||
}
|
||||
|
||||
// Is a given value a function?
|
||||
_.isFunction = function(obj) {
|
||||
return toString.call(obj) == '[object Function]';
|
||||
};
|
||||
|
||||
// Is a given value a string?
|
||||
_.isString = function(obj) {
|
||||
return toString.call(obj) == '[object String]';
|
||||
};
|
||||
|
||||
// Is a given value a number?
|
||||
_.isNumber = function(obj) {
|
||||
return toString.call(obj) == '[object Number]';
|
||||
};
|
||||
|
||||
// Is the given value `NaN`?
|
||||
_.isNaN = function(obj) {
|
||||
// `NaN` is the only value for which `===` is not reflexive.
|
||||
return obj !== obj;
|
||||
};
|
||||
|
||||
// Is a given value a boolean?
|
||||
_.isBoolean = function(obj) {
|
||||
return obj === true || obj === false || toString.call(obj) == '[object Boolean]';
|
||||
};
|
||||
|
||||
// Is a given value a date?
|
||||
_.isDate = function(obj) {
|
||||
return toString.call(obj) == '[object Date]';
|
||||
};
|
||||
|
||||
// Is the given value a regular expression?
|
||||
_.isRegExp = function(obj) {
|
||||
return toString.call(obj) == '[object RegExp]';
|
||||
};
|
||||
|
||||
// Is a given value equal to null?
|
||||
_.isNull = function(obj) {
|
||||
return obj === null;
|
||||
};
|
||||
|
||||
// Is a given variable undefined?
|
||||
_.isUndefined = function(obj) {
|
||||
return obj === void 0;
|
||||
};
|
||||
|
||||
// Has own property?
|
||||
_.has = function(obj, key) {
|
||||
return hasOwnProperty.call(obj, key);
|
||||
};
|
||||
|
||||
// Utility Functions
|
||||
// -----------------
|
||||
|
||||
// Run Underscore.js in *noConflict* mode, returning the `_` variable to its
|
||||
// previous owner. Returns a reference to the Underscore object.
|
||||
_.noConflict = function() {
|
||||
root._ = previousUnderscore;
|
||||
return this;
|
||||
};
|
||||
|
||||
// Keep the identity function around for default iterators.
|
||||
_.identity = function(value) {
|
||||
return value;
|
||||
};
|
||||
|
||||
// Run a function **n** times.
|
||||
_.times = function (n, iterator, context) {
|
||||
for (var i = 0; i < n; i++) iterator.call(context, i);
|
||||
};
|
||||
|
||||
// Escape a string for HTML interpolation.
|
||||
_.escape = function(string) {
|
||||
return (''+string).replace(/&/g, '&').replace(/</g, '<').replace(/>/g, '>').replace(/"/g, '"').replace(/'/g, ''').replace(/\//g,'/');
|
||||
};
|
||||
|
||||
// Add your own custom functions to the Underscore object, ensuring that
|
||||
// they're correctly added to the OOP wrapper as well.
|
||||
_.mixin = function(obj) {
|
||||
each(_.functions(obj), function(name){
|
||||
addToWrapper(name, _[name] = obj[name]);
|
||||
});
|
||||
};
|
||||
|
||||
// Generate a unique integer id (unique within the entire client session).
|
||||
// Useful for temporary DOM ids.
|
||||
var idCounter = 0;
|
||||
_.uniqueId = function(prefix) {
|
||||
var id = idCounter++;
|
||||
return prefix ? prefix + id : id;
|
||||
};
|
||||
|
||||
// By default, Underscore uses ERB-style template delimiters, change the
|
||||
// following template settings to use alternative delimiters.
|
||||
_.templateSettings = {
|
||||
evaluate : /<%([\s\S]+?)%>/g,
|
||||
interpolate : /<%=([\s\S]+?)%>/g,
|
||||
escape : /<%-([\s\S]+?)%>/g
|
||||
};
|
||||
|
||||
// When customizing `templateSettings`, if you don't want to define an
|
||||
// interpolation, evaluation or escaping regex, we need one that is
|
||||
// guaranteed not to match.
|
||||
var noMatch = /.^/;
|
||||
|
||||
// Within an interpolation, evaluation, or escaping, remove HTML escaping
|
||||
// that had been previously added.
|
||||
var unescape = function(code) {
|
||||
return code.replace(/\\\\/g, '\\').replace(/\\'/g, "'");
|
||||
};
|
||||
|
||||
// JavaScript micro-templating, similar to John Resig's implementation.
|
||||
// Underscore templating handles arbitrary delimiters, preserves whitespace,
|
||||
// and correctly escapes quotes within interpolated code.
|
||||
_.template = function(str, data) {
|
||||
var c = _.templateSettings;
|
||||
var tmpl = 'var __p=[],print=function(){__p.push.apply(__p,arguments);};' +
|
||||
'with(obj||{}){__p.push(\'' +
|
||||
str.replace(/\\/g, '\\\\')
|
||||
.replace(/'/g, "\\'")
|
||||
.replace(c.escape || noMatch, function(match, code) {
|
||||
return "',_.escape(" + unescape(code) + "),'";
|
||||
})
|
||||
.replace(c.interpolate || noMatch, function(match, code) {
|
||||
return "'," + unescape(code) + ",'";
|
||||
})
|
||||
.replace(c.evaluate || noMatch, function(match, code) {
|
||||
return "');" + unescape(code).replace(/[\r\n\t]/g, ' ') + ";__p.push('";
|
||||
})
|
||||
.replace(/\r/g, '\\r')
|
||||
.replace(/\n/g, '\\n')
|
||||
.replace(/\t/g, '\\t')
|
||||
+ "');}return __p.join('');";
|
||||
var func = new Function('obj', '_', tmpl);
|
||||
if (data) return func(data, _);
|
||||
return function(data) {
|
||||
return func.call(this, data, _);
|
||||
};
|
||||
};
|
||||
|
||||
// Add a "chain" function, which will delegate to the wrapper.
|
||||
_.chain = function(obj) {
|
||||
return _(obj).chain();
|
||||
};
|
||||
|
||||
// The OOP Wrapper
|
||||
// ---------------
|
||||
|
||||
// If Underscore is called as a function, it returns a wrapped object that
|
||||
// can be used OO-style. This wrapper holds altered versions of all the
|
||||
// underscore functions. Wrapped objects may be chained.
|
||||
var wrapper = function(obj) { this._wrapped = obj; };
|
||||
|
||||
// Expose `wrapper.prototype` as `_.prototype`
|
||||
_.prototype = wrapper.prototype;
|
||||
|
||||
// Helper function to continue chaining intermediate results.
|
||||
var result = function(obj, chain) {
|
||||
return chain ? _(obj).chain() : obj;
|
||||
};
|
||||
|
||||
// A method to easily add functions to the OOP wrapper.
|
||||
var addToWrapper = function(name, func) {
|
||||
wrapper.prototype[name] = function() {
|
||||
var args = slice.call(arguments);
|
||||
unshift.call(args, this._wrapped);
|
||||
return result(func.apply(_, args), this._chain);
|
||||
};
|
||||
};
|
||||
|
||||
// Add all of the Underscore functions to the wrapper object.
|
||||
_.mixin(_);
|
||||
|
||||
// Add all mutator Array functions to the wrapper.
|
||||
each(['pop', 'push', 'reverse', 'shift', 'sort', 'splice', 'unshift'], function(name) {
|
||||
var method = ArrayProto[name];
|
||||
wrapper.prototype[name] = function() {
|
||||
var wrapped = this._wrapped;
|
||||
method.apply(wrapped, arguments);
|
||||
var length = wrapped.length;
|
||||
if ((name == 'shift' || name == 'splice') && length === 0) delete wrapped[0];
|
||||
return result(wrapped, this._chain);
|
||||
};
|
||||
});
|
||||
|
||||
// Add all accessor Array functions to the wrapper.
|
||||
each(['concat', 'join', 'slice'], function(name) {
|
||||
var method = ArrayProto[name];
|
||||
wrapper.prototype[name] = function() {
|
||||
return result(method.apply(this._wrapped, arguments), this._chain);
|
||||
};
|
||||
});
|
||||
|
||||
// Start chaining a wrapped Underscore object.
|
||||
wrapper.prototype.chain = function() {
|
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<a href="#F"><strong>F</strong></a>
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||||
| <a href="#P"><strong>P</strong></a>
|
||||
| <a href="#R"><strong>R</strong></a>
|
||||
| <a href="#S"><strong>S</strong></a>
|
||||
| <a href="#U"><strong>U</strong></a>
|
||||
|
||||
</div>
|
||||
<h2 id="F">F</h2>
|
||||
<table style="width: 100%" class="indextable genindextable"><tr>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.fit">fit() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
</ul></td>
|
||||
</tr></table>
|
||||
|
||||
<h2 id="G">G</h2>
|
||||
<table style="width: 100%" class="indextable genindextable"><tr>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_aq_solvent_name">get_aq_solvent_name() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_aq_solvent_rho">get_aq_solvent_rho() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_complex_names">get_complex_names() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_diluant_name">get_diluant_name() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_diluant_rho">get_diluant_rho() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_exp_df">get_exp_df() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_extractant_name">get_extractant_name() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_extractant_rho">get_extractant_rho() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
</ul></td>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_in_moles">get_in_moles() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_objective_function">get_objective_function() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_opt_dict">get_opt_dict() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_optimizer">get_optimizer() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_phases">get_phases() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_predicted_dict">get_predicted_dict() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_rare_earth_ion_names">get_rare_earth_ion_names() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_re_species_list">get_re_species_list() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.get_temp_xml_file_path">get_temp_xml_file_path() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
</ul></td>
|
||||
</tr></table>
|
||||
|
||||
<h2 id="L">L</h2>
|
||||
<table style="width: 100%" class="indextable genindextable"><tr>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.log_mean_squared_error">log_mean_squared_error() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
</ul></td>
|
||||
</tr></table>
|
||||
|
||||
<h2 id="M">M</h2>
|
||||
<table style="width: 100%" class="indextable genindextable"><tr>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
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|
||||
module
|
||||
|
||||
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|
||||
<li><a href="modules/reeps.html#module-reeps">reeps</a>
|
||||
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|
||||
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|
||||
</ul></td>
|
||||
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|
||||
|
||||
<h2 id="P">P</h2>
|
||||
<table style="width: 100%" class="indextable genindextable"><tr>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.parity_plot">parity_plot() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
</ul></td>
|
||||
</tr></table>
|
||||
|
||||
<h2 id="R">R</h2>
|
||||
<table style="width: 100%" class="indextable genindextable"><tr>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.r_squared">r_squared() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li>
|
||||
reeps
|
||||
|
||||
<ul>
|
||||
<li><a href="modules/reeps.html#module-reeps">module</a>
|
||||
</li>
|
||||
</ul></li>
|
||||
</ul></td>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS">REEPS (class in reeps)</a>
|
||||
</li>
|
||||
</ul></td>
|
||||
</tr></table>
|
||||
|
||||
<h2 id="S">S</h2>
|
||||
<table style="width: 100%" class="indextable genindextable"><tr>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_aq_solvent_name">set_aq_solvent_name() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_aq_solvent_rho">set_aq_solvent_rho() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_complex_names">set_complex_names() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_diluant_name">set_diluant_name() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_diluant_rho">set_diluant_rho() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_exp_df">set_exp_df() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_extractant_name">set_extractant_name() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_extractant_rho">set_extractant_rho() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
</ul></td>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_in_moles">set_in_moles() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_objective_function">set_objective_function() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_opt_dict">set_opt_dict() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_optimizer">set_optimizer() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_phases">set_phases() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_rare_earth_ion_names">set_rare_earth_ion_names() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_re_species_list">set_re_species_list() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.set_temp_xml_file_path">set_temp_xml_file_path() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.slsqp_optimizer">slsqp_optimizer() (reeps.REEPS static method)</a>
|
||||
</li>
|
||||
</ul></td>
|
||||
</tr></table>
|
||||
|
||||
<h2 id="U">U</h2>
|
||||
<table style="width: 100%" class="indextable genindextable"><tr>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.update_predicted_dict">update_predicted_dict() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
</ul></td>
|
||||
<td style="width: 33%; vertical-align: top;"><ul>
|
||||
<li><a href="modules/reeps.html#reeps.REEPS.update_xml">update_xml() (reeps.REEPS method)</a>
|
||||
</li>
|
||||
</ul></td>
|
||||
</tr></table>
|
||||
|
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|
||||
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|
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<span id="install"></span><h1>Installation<a class="headerlink" href="#installation" title="Permalink to this headline">¶</a></h1>
|
||||
<div class="section" id="prerequisites">
|
||||
<h2>Prerequisites<a class="headerlink" href="#prerequisites" title="Permalink to this headline">¶</a></h2>
|
||||
<p>REEPS requires python3 (>=3.5) with the development headers.</p>
|
||||
</div>
|
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<div class="section" id="stable-release">
|
||||
<h2>Stable Release<a class="headerlink" href="#stable-release" title="Permalink to this headline">¶</a></h2>
|
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<p>There is currently no stable release</p>
|
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|
||||
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|
||||
<h2>Bleeding-edge version<a class="headerlink" href="#bleeding-edge-version" title="Permalink to this headline">¶</a></h2>
|
||||
<p>To install the latest master version:</p>
|
||||
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip install git+https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git
|
||||
</pre></div>
|
||||
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|
||||
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|
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|
||||
<h2>Development version<a class="headerlink" href="#development-version" title="Permalink to this headline">¶</a></h2>
|
||||
<p>To contribute to Stable-Baselines, with support for running tests and building the documentation.</p>
|
||||
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git clone https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git <span class="o">&&</span> <span class="nb">cd</span> parameter-estimation
|
||||
pip install -e .<span class="o">[</span>docs,tests<span class="o">]</span>
|
||||
</pre></div>
|
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|
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|
||||
<h2>Using Docker Images<a class="headerlink" href="#using-docker-images" title="Permalink to this headline">¶</a></h2>
|
||||
<p>Not set up yet.</p>
|
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<span id="quickstart"></span><h1>Getting Started<a class="headerlink" href="#getting-started" title="Permalink to this headline">¶</a></h1>
|
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<p>Here is a quick example of how to fit an xml thermodynamic model to experimental data.</p>
|
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<p>This code fits Nd standard enthalpy in the "twophase.xml" cantera file to the
|
||||
experimental data in "Nd_exp_data.csv".</p>
|
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<p>The code then produces a parity plot of the measured and predicted concentrations of Nd 3+ in the
|
||||
aqueous phase.</p>
|
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<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">reeps</span> <span class="kn">import</span> <span class="n">REEPS</span>
|
||||
|
||||
<span class="n">searcher_parameters</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'exp_csv_filename'</span><span class="p">:</span> <span class="s1">'Nd_exp_data.csv'</span><span class="p">,</span>
|
||||
<span class="s1">'phases_xml_filename'</span><span class="p">:</span> <span class="s1">'twophase.xml'</span><span class="p">,</span>
|
||||
<span class="s1">'opt_dict'</span><span class="p">:</span> <span class="p">{</span><span class="s1">'Nd(H(A)2)3(org)'</span><span class="p">:</span> <span class="p">{</span><span class="s1">'h0'</span><span class="p">:</span> <span class="o">-</span><span class="mf">4.7e6</span><span class="p">}},</span>
|
||||
<span class="s1">'phase_names'</span><span class="p">:</span> <span class="p">[</span><span class="s1">'HCl_electrolyte'</span><span class="p">,</span> <span class="s1">'PC88A_liquid'</span><span class="p">],</span>
|
||||
<span class="s1">'aq_solvent_name'</span><span class="p">:</span> <span class="s1">'H2O(L)'</span><span class="p">,</span>
|
||||
<span class="s1">'extractant_name'</span><span class="p">:</span> <span class="s1">'(HA)2(org)'</span><span class="p">,</span>
|
||||
<span class="s1">'diluant_name'</span><span class="p">:</span> <span class="s1">'dodecane'</span><span class="p">,</span>
|
||||
<span class="s1">'complex_names'</span><span class="p">:</span> <span class="p">[</span><span class="s1">'Nd(H(A)2)3(org)'</span><span class="p">],</span>
|
||||
<span class="s1">'rare_earth_ion_names'</span><span class="p">:</span> <span class="p">[</span><span class="s1">'Nd+++'</span><span class="p">],</span>
|
||||
<span class="s1">'aq_solvent_rho'</span><span class="p">:</span> <span class="mf">1000.0</span><span class="p">,</span>
|
||||
<span class="s1">'extractant_rho'</span><span class="p">:</span> <span class="mf">960.0</span><span class="p">,</span>
|
||||
<span class="s1">'diluant_rho'</span><span class="p">:</span> <span class="mf">750.0</span><span class="p">}</span>
|
||||
<span class="n">searcher</span> <span class="o">=</span> <span class="n">REEPS</span><span class="p">(</span><span class="o">**</span><span class="n">searcher_parameters</span><span class="p">)</span>
|
||||
<span class="n">est_enthalpy</span> <span class="o">=</span> <span class="n">searcher</span><span class="o">.</span><span class="n">fit</span><span class="p">()</span>
|
||||
<span class="n">searcher</span><span class="o">.</span><span class="n">update_xml</span><span class="p">(</span><span class="n">est_enthalpy</span><span class="p">)</span>
|
||||
<span class="n">searcher</span><span class="o">.</span><span class="n">parity_plot</span><span class="p">(</span><span class="n">print_r_squared</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>The code should return something like this</p>
|
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<div class="section" id="welcome-to-reeps-s-docs-the-rare-earth-element-parameter-searcher">
|
||||
<h1>Welcome to reeps's docs! - the Rare earth element parameter searcher<a class="headerlink" href="#welcome-to-reeps-s-docs-the-rare-earth-element-parameter-searcher" title="Permalink to this headline">¶</a></h1>
|
||||
<p>REEPS is a package for thermodynamic parameter estimation specifically
|
||||
for rare earth element extraction modeling.</p>
|
||||
<p>REEPS takes experimental data in a csv and system data in a xml.</p>
|
||||
<p>The package then uses Cantera, another python package, to simulate equilibrium.</p>
|
||||
<p>Error between predicted and experimental data is then minimized.</p>
|
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<span class="target" id="module-reeps"><span id="reeps"></span></span><div class="section" id="id1">
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<h1>REEPS<a class="headerlink" href="#id1" title="Permalink to this headline">¶</a></h1>
|
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<div class="section" id="parameters">
|
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<h2>Parameters<a class="headerlink" href="#parameters" title="Permalink to this headline">¶</a></h2>
|
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<dl class="py class">
|
||||
<dt id="reeps.REEPS">
|
||||
<em class="property">class </em><code class="sig-prename descclassname">reeps.</code><code class="sig-name descname">REEPS</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">exp_csv_filename</span></em>, <em class="sig-param"><span class="n">phases_xml_filename</span></em>, <em class="sig-param"><span class="n">phase_names</span></em>, <em class="sig-param"><span class="n">aq_solvent_name</span></em>, <em class="sig-param"><span class="n">extractant_name</span></em>, <em class="sig-param"><span class="n">diluant_name</span></em>, <em class="sig-param"><span class="n">complex_names</span></em>, <em class="sig-param"><span class="n">rare_earth_ion_names</span></em>, <em class="sig-param"><span class="n">re_species_list</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">aq_solvent_rho</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">extractant_rho</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">diluant_rho</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">opt_dict</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">objective_function</span><span class="o">=</span><span class="default_value">'Log-MSE'</span></em>, <em class="sig-param"><span class="n">optimizer</span><span class="o">=</span><span class="default_value">'SLSQP'</span></em>, <em class="sig-param"><span class="n">temp_xml_file_path</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Rare earth elements (REE or RE) Takes in experimental data
|
||||
Returns parameters for GEM</p>
|
||||
<div class="admonition note">
|
||||
<p class="admonition-title">Note</p>
|
||||
<p>The order in which the REEs appear in the csv file must be the same
|
||||
order as they appear in the xml, complex_names and
|
||||
rare_earth_ion_names.</p>
|
||||
<p>For example, say in exp_csv_filename's csv, RE_1 is Nd RE_2 is Pr,
|
||||
and</p>
|
||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">aq_solvent_name</span> <span class="o">=</span> <span class="s1">'H2O(L)'</span>
|
||||
<span class="n">extractant_name</span> <span class="o">=</span> <span class="s1">'(HA)2(org)'</span>
|
||||
<span class="n">diluent_name</span> <span class="o">=</span> <span class="s1">'dodecane'</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>Then:</p>
|
||||
<p>The csvs column ordering must be:</p>
|
||||
<p>[h_i, h_eq, z_i, z_eq, Nd_aq_i, Nd_aq_eq, Nd_d_eq,
|
||||
Pr_aq_i, Pr_aq_eq, Pr_d_eq]</p>
|
||||
<p>The aqueous speciesArray must be
|
||||
"H2O(L) H+ OH- Cl- Nd+++ Pr+++"</p>
|
||||
<p>The organic speciesArray must be
|
||||
"(HA)2(org) dodecane Nd(H(A)2)3(org) Pr(H(A)2)3(org)"</p>
|
||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">complex_names</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'Nd(H(A)2)3(org)'</span><span class="p">,</span> <span class="s1">'Pr(H(A)2)3(org)'</span><span class="p">]</span>
|
||||
<span class="n">rare_earth_ion_names</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'Nd+++'</span><span class="p">,</span> <span class="s1">'Pr+++'</span><span class="p">]</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><ul class="simple">
|
||||
<li><p><strong>exp_csv_filename</strong> -- <p>(str) csv file name with experimental data</p>
|
||||
<p>In the .csv file, the rows are different experiments and
|
||||
columns are the measured quantities.</p>
|
||||
<p>The ordering of the columns needs to be:</p>
|
||||
<p>[h_i, h_eq, z_i, z_eq, {RE_1}_aq_i, {RE_1}_aq_eq, {RE_1}_d_eq,
|
||||
{RE_2}_aq_i, {RE_2}_aq_eq, {RE_2}_d_eq,...
|
||||
{RE_N}_aq_i, {RE_N}_aq_eq, {RE_N}_d_eq]</p>
|
||||
<p>Naming does not matter, just the order.</p>
|
||||
<p>Where {RE_1}-{RE_N} are the rare earth element names of interest
|
||||
i.e. Nd, Pr, La, etc.</p>
|
||||
<p>Below is an explanation of the columns.</p>
|
||||
<table class="docutils align-default">
|
||||
<colgroup>
|
||||
<col style="width: 11%" />
|
||||
<col style="width: 20%" />
|
||||
<col style="width: 69%" />
|
||||
</colgroup>
|
||||
<thead>
|
||||
<tr class="row-odd"><th class="head"><p>Index</p></th>
|
||||
<th class="head"><p>Column</p></th>
|
||||
<th class="head"><p>Meaning</p></th>
|
||||
</tr>
|
||||
</thead>
|
||||
<tbody>
|
||||
<tr class="row-even"><td><p>0</p></td>
|
||||
<td><p>h_i</p></td>
|
||||
<td><p>Initial Concentration of
|
||||
H+ ions (mol/L)</p></td>
|
||||
</tr>
|
||||
<tr class="row-odd"><td><p>1</p></td>
|
||||
<td><p>h_eq</p></td>
|
||||
<td><p>Equilibrium concentration of
|
||||
H+ ions (mol/L)</p></td>
|
||||
</tr>
|
||||
<tr class="row-even"><td><p>2</p></td>
|
||||
<td><p>z_i</p></td>
|
||||
<td><p>Initial concentration of
|
||||
extractant (mol/L)</p></td>
|
||||
</tr>
|
||||
<tr class="row-odd"><td><p>3</p></td>
|
||||
<td><p>z_eq</p></td>
|
||||
<td><p>Equilibrium concentration of
|
||||
extractant (mol/L)</p></td>
|
||||
</tr>
|
||||
<tr class="row-even"><td><p>4</p></td>
|
||||
<td><p>{RE}_aq_i</p></td>
|
||||
<td><p>Initial concentration of RE ions (mol/L)</p></td>
|
||||
</tr>
|
||||
<tr class="row-odd"><td><p>5</p></td>
|
||||
<td><p>{RE}_aq_eq</p></td>
|
||||
<td><p>Equilibrium concentration of RE ions
|
||||
in aqueous phase (mol/L)</p></td>
|
||||
</tr>
|
||||
<tr class="row-even"><td><p>6</p></td>
|
||||
<td><p>{RE}_d_eq</p></td>
|
||||
<td><p>Equilibrium Ratio between amount of
|
||||
RE atoms in organic to aqueous</p></td>
|
||||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
</p></li>
|
||||
<li><p><strong>phases_xml_filename</strong> -- <p>(str) xml file with parameters
|
||||
for equilibrium calc</p>
|
||||
<p>Would recommend copying and modifying xmls located in data/xmls
|
||||
or in Cantera's "data" folder</p>
|
||||
<p>speciesArray fields need specific ordering.</p>
|
||||
<p>In aqueous phase: aq_solvent_name, H+, OH-, Cl-, RE_1, RE_2, ..., RE_N</p>
|
||||
<p>For aqueous phase, RE_1-RE_N represent RE ion names i.e. Nd+++, Pr+++</p>
|
||||
<p>In organic phase : extractant_name, diluant_name, RE_1, RE_2, ..., RE_N</p>
|
||||
<p>For organic phase, RE_1-RE_N represent RE complex names
|
||||
i.e. Nd(H(A)2)3(org), Pr(H(A)2)3(org)</p>
|
||||
</p></li>
|
||||
<li><p><strong>phase_names</strong> -- <p>(list) names of phases in xml file</p>
|
||||
<p>Found in the xml file under <phase ... id={phase_name}></p>
|
||||
</p></li>
|
||||
<li><p><strong>aq_solvent_name</strong> -- (str) name of aqueous solvent in xml file</p></li>
|
||||
<li><p><strong>extractant_name</strong> -- (str) name of extractant in xml file</p></li>
|
||||
<li><p><strong>diluant_name</strong> -- (str) name of diluant in xml file</p></li>
|
||||
<li><p><strong>complex_names</strong> -- <p>(list) names of complexes in xml file.</p>
|
||||
<p>Ensure the ordering is correct</p>
|
||||
</p></li>
|
||||
<li><p><strong>rare_earth_ion_names</strong> -- <p>(list) names of rare earth ions in xml file</p>
|
||||
<p>Ensure the ordering is correct</p>
|
||||
</p></li>
|
||||
<li><p><strong>re_species_list</strong> -- <p>(list) names of rare earth elements.</p>
|
||||
<dl class="simple">
|
||||
<dt>If <code class="docutils literal notranslate"><span class="pre">None</span></code>, re_species_list will be rare_earth_ion_names without '+'</dt><dd><p>i.e. 'Nd+++'->'Nd'</p>
|
||||
</dd>
|
||||
</dl>
|
||||
<p>Ensure the ordering is correct</p>
|
||||
</p></li>
|
||||
<li><p><strong>aq_solvent_rho</strong> -- <p>(float) density of solvent (g/L)</p>
|
||||
<p>If <code class="docutils literal notranslate"><span class="pre">None</span></code>, molar volume/molecular weight is used from xml</p>
|
||||
</p></li>
|
||||
<li><p><strong>extractant_rho</strong> -- <p>(float) density of extractant (g/L)</p>
|
||||
<p>If <code class="docutils literal notranslate"><span class="pre">None</span></code>, molar volume/molecular weight is used from xml</p>
|
||||
</p></li>
|
||||
<li><p><strong>diluant_rho</strong> -- <p>(float) density of diluant (g/L)</p>
|
||||
<p>If <code class="docutils literal notranslate"><span class="pre">None</span></code>, molar volume/molecular weight is used from xml</p>
|
||||
</p></li>
|
||||
<li><p><strong>opt_dict</strong> -- <p>(dict) dictionary containing info about which
|
||||
species parameters are updated to fit model to experimental data</p>
|
||||
<p>Should have the format as below</p>
|
||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">opt_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s2">"species1"</span><span class="p">:</span>
|
||||
<span class="p">{</span><span class="s2">"parameter1"</span><span class="p">:</span> <span class="s2">"guess1"</span><span class="p">,</span>
|
||||
<span class="s2">"parameter2"</span><span class="p">:</span> <span class="s2">"guess2"</span><span class="p">,</span>
|
||||
<span class="o">...</span>
|
||||
<span class="s2">"parameterN"</span><span class="p">:</span> <span class="s2">"guessN"</span><span class="p">}</span>
|
||||
<span class="s2">"species2"</span><span class="p">:</span>
|
||||
<span class="p">{</span><span class="s2">"parameter1"</span><span class="p">:</span> <span class="s2">"guess1"</span><span class="p">,</span>
|
||||
<span class="s2">"parameter2"</span><span class="p">:</span> <span class="s2">"guess2"</span><span class="p">,</span>
|
||||
<span class="o">...</span>
|
||||
<span class="s2">"parameterN"</span><span class="p">:</span> <span class="s2">"guessN"</span><span class="p">}</span>
|
||||
<span class="o">...</span>
|
||||
<span class="s2">"speciesN"</span><span class="p">:</span>
|
||||
<span class="p">{</span><span class="s2">"parameter1"</span><span class="p">:</span> <span class="s2">"guess1"</span><span class="p">,</span>
|
||||
<span class="s2">"parameter2"</span><span class="p">:</span> <span class="s2">"guess2"</span><span class="p">,</span>
|
||||
<span class="o">...</span>
|
||||
<span class="s2">"parameterN"</span><span class="p">:</span> <span class="s2">"guessN"</span><span class="p">}</span>
|
||||
<span class="p">}</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
</p></li>
|
||||
<li><p><strong>objective_function</strong> -- <p>(function or str) function to compute objective</p>
|
||||
<p>By default, the objective function is log mean squared error
|
||||
of distribution ratio</p>
|
||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">log10</span><span class="p">(</span><span class="n">d_pred</span><span class="p">)</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">log10</span><span class="p">(</span><span class="n">d_meas</span><span class="p">))</span><span class="o">^</span><span class="mi">2</span><span class="p">)</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>Function needs to take inputs:</p>
|
||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">objective_function</span><span class="p">(</span><span class="n">predicted_dict</span><span class="p">,</span> <span class="n">measured_df</span><span class="p">,</span> <span class="n">kwargs</span><span class="p">)</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<p><code class="docutils literal notranslate"><span class="pre">kwargs</span></code> is optional</p>
|
||||
<p>Function needs to return: (float) value computed by objective function</p>
|
||||
<p>Below is the guide for referencing predicted values</p>
|
||||
<table class="docutils align-default">
|
||||
<colgroup>
|
||||
<col style="width: 46%" />
|
||||
<col style="width: 54%" />
|
||||
</colgroup>
|
||||
<thead>
|
||||
<tr class="row-odd"><th class="head"><p>To access</p></th>
|
||||
<th class="head"><p>Use</p></th>
|
||||
</tr>
|
||||
</thead>
|
||||
<tbody>
|
||||
<tr class="row-even"><td><p>hydrogen ion conc in aq</p></td>
|
||||
<td><p>predicted_dict['h_eq']</p></td>
|
||||
</tr>
|
||||
<tr class="row-odd"><td><p>extractant conc in org</p></td>
|
||||
<td><p>predicted_dict['z_eq']</p></td>
|
||||
</tr>
|
||||
<tr class="row-even"><td><p>RE ion eq conc in aq</p></td>
|
||||
<td><p>predicted_dict['{RE}_aq_eq']</p></td>
|
||||
</tr>
|
||||
<tr class="row-odd"><td><p>RE complex eq conc in org</p></td>
|
||||
<td><p>predicted_dict['{RE}_org_eq']</p></td>
|
||||
</tr>
|
||||
<tr class="row-even"><td><p>RE distribution ratio</p></td>
|
||||
<td><p>predicted_dict['{RE}_d_eq']</p></td>
|
||||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
<p>Replace "{RE}" with rare earth element i.e. Nd, La, etc.</p>
|
||||
<p>For measured values, use the same names, but
|
||||
replace <code class="docutils literal notranslate"><span class="pre">predicted_dict</span></code> with <code class="docutils literal notranslate"><span class="pre">measured_df</span></code></p>
|
||||
</p></li>
|
||||
<li><p><strong>optimizer</strong> -- <p>(function or str) function to perform optimization</p>
|
||||
<div class="admonition note">
|
||||
<p class="admonition-title">Note</p>
|
||||
<p>The optimized variables are not directly the species parameters,
|
||||
but instead are first multiplied by the initial guess before
|
||||
sending becoming the species parameters.</p>
|
||||
<p>For example, say</p>
|
||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">opt_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'Nd(H(A)2)3(org):'</span><span class="n">h0</span><span class="s1">':-4.7e6}</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>If the bounds on h0 need to be [-4.7e7,-4.7e5], then
|
||||
divide the bounds by the guess and get</p>
|
||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="s2">"bounds"</span><span class="p">:</span> <span class="p">[(</span><span class="mf">1e-1</span><span class="p">,</span> <span class="mf">1e1</span><span class="p">)]</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>Though fit() returns a structure identical to opt_dict with correct
|
||||
scaled values, in case bounds and constraints are used, you must
|
||||
note the optimized x's are first multiplied by the initial guess
|
||||
before written to the xml.</p>
|
||||
</div>
|
||||
<p>By default, the optimizer is scipy's optimize function with</p>
|
||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">default_kwargs</span><span class="o">=</span> <span class="p">{</span><span class="s2">"method"</span><span class="p">:</span> <span class="s1">'SLSQP'</span><span class="p">,</span>
|
||||
<span class="s2">"bounds"</span><span class="p">:</span> <span class="p">[(</span><span class="mf">1e-1</span><span class="p">,</span> <span class="mf">1e1</span><span class="p">)]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">x_guess</span><span class="p">),</span>
|
||||
<span class="s2">"constraints"</span><span class="p">:</span> <span class="p">(),</span>
|
||||
<span class="s2">"options"</span><span class="p">:</span> <span class="p">{</span><span class="s1">'disp'</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span>
|
||||
<span class="s1">'maxiter'</span><span class="p">:</span> <span class="mi">1000</span><span class="p">,</span>
|
||||
<span class="s1">'ftol'</span><span class="p">:</span> <span class="mf">1e-6</span><span class="p">}}</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>Function needs to take inputs:
|
||||
<code class="docutils literal notranslate"><span class="pre">optimizer(objective_function,</span> <span class="pre">x_guess,</span> <span class="pre">kwargs)</span></code></p>
|
||||
<p><code class="docutils literal notranslate"><span class="pre">kwargs</span></code> is optional</p>
|
||||
<p>Function needs to return: (np.ndarray) Optimized parameters</p>
|
||||
</p></li>
|
||||
<li><p><strong>temp_xml_file_path</strong> -- <p>(str) path to temporary xml file.</p>
|
||||
<p>This xml file is a duplicate of the phases_xml_file name and is
|
||||
modified during the optimization process to avoid changing the original
|
||||
xml file</p>
|
||||
<p>default is local temp folder</p>
|
||||
</p></li>
|
||||
</ul>
|
||||
</dd>
|
||||
</dl>
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.fit">
|
||||
<code class="sig-name descname">fit</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">objective_function</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">optimizer</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">objective_kwargs</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">optimizer_kwargs</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span> → dict<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.fit"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.fit" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Fits experimental to modeled data by minimizing objective function
|
||||
with optimizer. Returns dictionary with opt_dict structure</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><ul class="simple">
|
||||
<li><p><strong>objective_function</strong> -- (function) function to compute objective</p></li>
|
||||
<li><p><strong>optimizer</strong> -- (function) function to perform optimization</p></li>
|
||||
<li><p><strong>optimizer_kwargs</strong> -- (dict) arguments for optimizer</p></li>
|
||||
<li><p><strong>objective_kwargs</strong> -- (dict) arguments for objective function</p></li>
|
||||
</ul>
|
||||
</dd>
|
||||
<dt class="field-even">Returns opt_dict</dt>
|
||||
<dd class="field-even"><p>(dict) optimized opt_dict. Has identical structure
|
||||
as opt_dict</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_aq_solvent_name">
|
||||
<code class="sig-name descname">get_aq_solvent_name</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → str<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_aq_solvent_name"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_aq_solvent_name" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns aq_solvent_name</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>aq_solvent_name: (str) name of aqueous solvent in xml file</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_aq_solvent_rho">
|
||||
<code class="sig-name descname">get_aq_solvent_rho</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → str<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_aq_solvent_rho"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_aq_solvent_rho" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns aqueous solvent density (g/L)</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>aq_solvent_rho: (float) density of aqueous solvent</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_complex_names">
|
||||
<code class="sig-name descname">get_complex_names</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → list<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_complex_names"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_complex_names" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns list of complex names</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>complex_names: (list) names of complexes in xml file.</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_diluant_name">
|
||||
<code class="sig-name descname">get_diluant_name</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → str<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_diluant_name"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_diluant_name" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns diluant name
|
||||
:return: diluant_name: (str) name of diluant in xml file</p>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_diluant_rho">
|
||||
<code class="sig-name descname">get_diluant_rho</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → str<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_diluant_rho"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_diluant_rho" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns diluant density (g/L)</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>diluant_rho: (float) density of diluant</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_exp_df">
|
||||
<code class="sig-name descname">get_exp_df</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → pandas.core.frame.DataFrame<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_exp_df"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_exp_df" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns the experimental DataFrame</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>(pd.DataFrame) Experimental data</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_extractant_name">
|
||||
<code class="sig-name descname">get_extractant_name</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → str<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_extractant_name"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_extractant_name" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns extractant name</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>extractant_name: (str) name of extractant in xml file</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_extractant_rho">
|
||||
<code class="sig-name descname">get_extractant_rho</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → str<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_extractant_rho"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_extractant_rho" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns extractant density (g/L)</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>extractant_rho: (float) density of extractant</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_in_moles">
|
||||
<code class="sig-name descname">get_in_moles</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → pandas.core.frame.DataFrame<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_in_moles"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_in_moles" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns the in_moles DataFrame which contains the initial mole
|
||||
fractions of each species for each experiment</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>in_moles: (pd.DataFrame) DataFrame with initial mole fractions</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_objective_function">
|
||||
<code class="sig-name descname">get_objective_function</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_objective_function"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_objective_function" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns objective function</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>objective_function: (func) Objective function to quantify
|
||||
error between model and experimental data</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_opt_dict">
|
||||
<code class="sig-name descname">get_opt_dict</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → dict<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_opt_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_opt_dict" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns the dictionary containing optimization information</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>(dict) dictionary containing info about which
|
||||
species parameters are updated to fit model to experimental data</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_optimizer">
|
||||
<code class="sig-name descname">get_optimizer</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_optimizer"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_optimizer" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns objective function</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>optimizer: (func) Optimizer function to minimize objective
|
||||
function</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_phases">
|
||||
<code class="sig-name descname">get_phases</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → list<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_phases"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_phases" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns the list of Cantera solutions</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>(list) list of Cantera solutions/phases</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_predicted_dict">
|
||||
<code class="sig-name descname">get_predicted_dict</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_predicted_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_predicted_dict" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns predicted dictionary of species concentrations
|
||||
that xml parameters predicts given current in_moles</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>predicted_dict: (dict) dictionary of species concentrations</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_rare_earth_ion_names">
|
||||
<code class="sig-name descname">get_rare_earth_ion_names</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → list<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_rare_earth_ion_names"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_rare_earth_ion_names" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns list of rare earth ion names</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>rare_earth_ion_names: (list) names of rare earth ions in
|
||||
xml file</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_re_species_list">
|
||||
<code class="sig-name descname">get_re_species_list</code><span class="sig-paren">(</span><span class="sig-paren">)</span> → list<a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_re_species_list"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_re_species_list" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns list of rare earth element names</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>re_species_list: (list) names of rare earth elements in
|
||||
xml file</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.get_temp_xml_file_path">
|
||||
<code class="sig-name descname">get_temp_xml_file_path</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.get_temp_xml_file_path"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.get_temp_xml_file_path" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Returns path to temporary xml file.</p>
|
||||
<p>This xml file is a duplicate of the phases_xml_file name and is
|
||||
modified during the optimization process to avoid changing the original
|
||||
xml file.</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Returns</dt>
|
||||
<dd class="field-odd"><p>temp_xml_file_path: (str) path to temporary xml file.</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.log_mean_squared_error">
|
||||
<code class="sig-name descname">log_mean_squared_error</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">predicted_dict</span></em>, <em class="sig-param"><span class="n">meas_df</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.log_mean_squared_error"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.log_mean_squared_error" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Default objective function for REEPS</p>
|
||||
<p>Returns the log mean squared error of
|
||||
predicted distribution ratios (d=n_org/n_aq)
|
||||
to measured d.</p>
|
||||
<p>np.sum((np.log10(d_pred)-np.log10(d_meas))**2)</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><ul class="simple">
|
||||
<li><p><strong>predicted_dict</strong> -- (dict) contains predicted data</p></li>
|
||||
<li><p><strong>meas_df</strong> -- (pd.DataFrame) contains experimental data</p></li>
|
||||
</ul>
|
||||
</dd>
|
||||
<dt class="field-even">Returns</dt>
|
||||
<dd class="field-even"><p>(float) log mean squared error between predicted and measured</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.parity_plot">
|
||||
<code class="sig-name descname">parity_plot</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">compared_value</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">save_path</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">print_r_squared</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.parity_plot"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.parity_plot" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Parity plot between measured and predicted compared_value.
|
||||
Default compared value is {RE_1}_aq_eq</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><ul class="simple">
|
||||
<li><p><strong>compared_value</strong> -- (str) Quantity to compare predicted and
|
||||
experimental data. Can be any column containing "eq" in exp_df i.e.
|
||||
h_eq, z_eq, {RE}_d_eq, etc.</p></li>
|
||||
<li><p><strong>save_path</strong> -- (str) save path for parity plot</p></li>
|
||||
<li><p><strong>print_r_squared</strong> -- (boolean) To plot or not to plot r-squared
|
||||
value. Prints 2 places past decimal</p></li>
|
||||
</ul>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.r_squared">
|
||||
<code class="sig-name descname">r_squared</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">compared_value</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.r_squared"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.r_squared" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>r-squared value comparing measured and predicted compared value</p>
|
||||
<p>Closer to 1, the better the model's predictions.</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>compared_value</strong> -- (str) Quantity to compare predicted and
|
||||
experimental data. Can be any column containing "eq" in exp_df i.e.
|
||||
h_eq, z_eq, {RE}_d_eq, etc.</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_aq_solvent_name">
|
||||
<code class="sig-name descname">set_aq_solvent_name</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">aq_solvent_name</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_aq_solvent_name"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_aq_solvent_name" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Change aq_solvent_name to input aq_solvent_name</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>aq_solvent_name</strong> -- (str) name of aqueous solvent in xml file</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_aq_solvent_rho">
|
||||
<code class="sig-name descname">set_aq_solvent_rho</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">aq_solvent_rho</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_aq_solvent_rho"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_aq_solvent_rho" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Changes aqueous solvent density (g/L) to input aq_solvent_rho</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>aq_solvent_rho</strong> -- (float) density of aqueous solvent</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_complex_names">
|
||||
<code class="sig-name descname">set_complex_names</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">complex_names</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_complex_names"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_complex_names" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Change complex names list to input complex_names</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>complex_names</strong> -- (list) names of complexes in xml file.</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_diluant_name">
|
||||
<code class="sig-name descname">set_diluant_name</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">diluant_name</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_diluant_name"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_diluant_name" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Change diluant_name to input diluant_name</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>diluant_name</strong> -- (str) name of diluant in xml file</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_diluant_rho">
|
||||
<code class="sig-name descname">set_diluant_rho</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">diluant_rho</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_diluant_rho"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_diluant_rho" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Changes diluant density (g/L) to input diluant_rho</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>diluant_rho</strong> -- (float) density of diluant</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_exp_df">
|
||||
<code class="sig-name descname">set_exp_df</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">exp_csv_filename</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_exp_df"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_exp_df" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Changes the experimental DataFrame to input exp_csv_filename data
|
||||
and renames columns to internal REEPS names</p>
|
||||
<p>h_i, h_eq, z_i, z_eq, {RE}_aq_i, {RE}_aq_eq, {RE}_d</p>
|
||||
<p>See class docstring on "exp_csv_filename" for further explanations.</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>exp_csv_filename</strong> -- (str) file name/path for experimental data csv</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_extractant_name">
|
||||
<code class="sig-name descname">set_extractant_name</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">extractant_name</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_extractant_name"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_extractant_name" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Change extractant_name to input extractant_name
|
||||
:param extractant_name: (str) name of extractant in xml file</p>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_extractant_rho">
|
||||
<code class="sig-name descname">set_extractant_rho</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">extractant_rho</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_extractant_rho"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_extractant_rho" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Changes extractant density (g/L) to input extractant_rho</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>extractant_rho</strong> -- (float) density of extractant</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_in_moles">
|
||||
<code class="sig-name descname">set_in_moles</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">feed_vol</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_in_moles"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_in_moles" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Function that initializes mole fractions to input feed_vol</p>
|
||||
<p>This function is called at initialization</p>
|
||||
<p>Sets in_moles to a pd.DataFrame containing initial mole fractions</p>
|
||||
<p>Columns for species and rows for different experiments</p>
|
||||
<p>This function also calls update_predicted_dict</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>feed_vol</strong> -- (float) feed volume of mixture (g/L)</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_objective_function">
|
||||
<code class="sig-name descname">set_objective_function</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">objective_function</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_objective_function"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_objective_function" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Change objective function to input objective_function.</p>
|
||||
<blockquote>
|
||||
<div><p>See class docstring on "objective_function" for instructions</p>
|
||||
</div></blockquote>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>objective_function</strong> -- (func) Objective function to quantify
|
||||
error between model and experimental data</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_opt_dict">
|
||||
<code class="sig-name descname">set_opt_dict</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">opt_dict</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_opt_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_opt_dict" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Change the dictionary to input opt_dict.</p>
|
||||
<p>opt_dict specifies species parameters to be updated to
|
||||
fit model to data</p>
|
||||
<p>See class docstring on "opt_dict" for more information.</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>opt_dict</strong> -- (dict) dictionary containing info about which
|
||||
species parameters are updated to fit model to experimental data</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_optimizer">
|
||||
<code class="sig-name descname">set_optimizer</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">optimizer</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_optimizer"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_optimizer" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Change optimizer function to input optimizer.</p>
|
||||
<blockquote>
|
||||
<div><p>See class docstring on "optimizer" for instructions</p>
|
||||
</div></blockquote>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>optimizer</strong> -- (func) Optimizer function to minimize objective
|
||||
function</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_phases">
|
||||
<code class="sig-name descname">set_phases</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">phases_xml_filename</span></em>, <em class="sig-param"><span class="n">phase_names</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_phases"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_phases" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Change list of Cantera solutions by inputting
|
||||
new xml file name and phase names</p>
|
||||
<p>Also runs set_in_moles to set initial molality to 1 g/L</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><ul class="simple">
|
||||
<li><p><strong>phases_xml_filename</strong> -- (str) xml file with parameters
|
||||
for equilibrium calc</p></li>
|
||||
<li><p><strong>phase_names</strong> -- (list) names of phases in xml file</p></li>
|
||||
</ul>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_rare_earth_ion_names">
|
||||
<code class="sig-name descname">set_rare_earth_ion_names</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">rare_earth_ion_names</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_rare_earth_ion_names"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_rare_earth_ion_names" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><dl class="simple">
|
||||
<dt>Change list of rare earth ion names to input</dt><dd><p>rare_earth_ion_names</p>
|
||||
</dd>
|
||||
</dl>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>rare_earth_ion_names</strong> -- (list) names of rare earth ions in
|
||||
xml file</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_re_species_list">
|
||||
<code class="sig-name descname">set_re_species_list</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">re_species_list</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_re_species_list"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_re_species_list" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><dl class="simple">
|
||||
<dt>Change list of rare earth ion names to input</dt><dd><p>rare_earth_ion_names</p>
|
||||
</dd>
|
||||
</dl>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>re_species_list</strong> -- (list) names of rare earth elements in
|
||||
xml file</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.set_temp_xml_file_path">
|
||||
<code class="sig-name descname">set_temp_xml_file_path</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">temp_xml_file_path</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.set_temp_xml_file_path"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.set_temp_xml_file_path" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Changes temporary xml file path to input temp_xml_file_path.</p>
|
||||
<p>This xml file is a duplicate of the phases_xml_file name and is
|
||||
modified during the optimization process to avoid changing the original
|
||||
xml file.</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><p><strong>temp_xml_file_path</strong> -- (str) path to temporary xml file.</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.slsqp_optimizer">
|
||||
<em class="property">static </em><code class="sig-name descname">slsqp_optimizer</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">objective</span></em>, <em class="sig-param"><span class="n">x_guess</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.slsqp_optimizer"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.slsqp_optimizer" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>The default optimizer for REEPS</p>
|
||||
<p>Uses scipy.minimize with options</p>
|
||||
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">default_kwargs</span><span class="o">=</span> <span class="p">{</span><span class="s2">"method"</span><span class="p">:</span> <span class="s1">'SLSQP'</span><span class="p">,</span>
|
||||
<span class="s2">"bounds"</span><span class="p">:</span> <span class="p">[(</span><span class="mf">1e-1</span><span class="p">,</span> <span class="mf">1e1</span><span class="p">)</span><span class="o">*</span><span class="nb">len</span><span class="p">(</span><span class="n">x_guess</span><span class="p">)],</span>
|
||||
<span class="s2">"constraints"</span><span class="p">:</span> <span class="p">(),</span>
|
||||
<span class="s2">"options"</span><span class="p">:</span> <span class="p">{</span><span class="s1">'disp'</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span>
|
||||
<span class="s1">'maxiter'</span><span class="p">:</span> <span class="mi">1000</span><span class="p">,</span>
|
||||
<span class="s1">'ftol'</span><span class="p">:</span> <span class="mf">1e-6</span><span class="p">}}</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><ul class="simple">
|
||||
<li><p><strong>objective</strong> -- (func) the objective function</p></li>
|
||||
<li><p><strong>x_guess</strong> -- (np.ndarray) the initial guess (always 1)</p></li>
|
||||
</ul>
|
||||
</dd>
|
||||
<dt class="field-even">Returns</dt>
|
||||
<dd class="field-even"><p>(np.ndarray) Optimized parameters</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.update_predicted_dict">
|
||||
<code class="sig-name descname">update_predicted_dict</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">phases_xml_filename</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">phase_names</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.update_predicted_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.update_predicted_dict" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>Function that computes the predicted equilibrium concentrations
|
||||
the fed phases_xml_filename parameters predicts given the initial
|
||||
mole fractions set by in_moles()</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><ul class="simple">
|
||||
<li><p><strong>phases_xml_filename</strong> -- (str)xml file with parameters
|
||||
for equilibrium calc. If <code class="docutils literal notranslate"><span class="pre">None</span></code>, the
|
||||
current phases_xml_filename is used.</p></li>
|
||||
<li><p><strong>phase_names</strong> -- (list) names of phases in xml file.
|
||||
If <code class="docutils literal notranslate"><span class="pre">None</span></code>, the current phases_names is used.</p></li>
|
||||
</ul>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
<dl class="py method">
|
||||
<dt id="reeps.REEPS.update_xml">
|
||||
<code class="sig-name descname">update_xml</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">info_dict</span></em>, <em class="sig-param"><span class="n">phases_xml_filename</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/reeps/reeps.html#REEPS.update_xml"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#reeps.REEPS.update_xml" title="Permalink to this definition">¶</a></dt>
|
||||
<dd><p>updates xml file with info_dict</p>
|
||||
<dl class="field-list simple">
|
||||
<dt class="field-odd">Parameters</dt>
|
||||
<dd class="field-odd"><ul class="simple">
|
||||
<li><p><strong>info_dict</strong> -- (dict) info in {species_names:{thermo_prop:val}}
|
||||
Requires an identical structure to opt_dict</p></li>
|
||||
<li><p><strong>phases_xml_filename</strong> -- (str) xml filename if editing other xml
|
||||
If <code class="docutils literal notranslate"><span class="pre">None</span></code>, the current xml will be modified and the internal
|
||||
Cantera phases will be refreshed to the new values.</p></li>
|
||||
</ul>
|
||||
</dd>
|
||||
</dl>
|
||||
</dd></dl>
|
||||
|
||||
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|
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|
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|
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|
||||
|
||||
<div role="navigation" aria-label="breadcrumbs navigation">
|
||||
|
||||
<ul class="wy-breadcrumbs">
|
||||
|
||||
<li><a href="index.html">Docs</a> »</li>
|
||||
|
||||
<li>Search</li>
|
||||
|
||||
|
||||
<li class="wy-breadcrumbs-aside">
|
||||
|
||||
|
||||
|
||||
</li>
|
||||
|
||||
</ul>
|
||||
|
||||
|
||||
<hr/>
|
||||
</div>
|
||||
<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
|
||||
<div itemprop="articleBody">
|
||||
|
||||
<noscript>
|
||||
<div id="fallback" class="admonition warning">
|
||||
<p class="last">
|
||||
Please activate JavaScript to enable the search
|
||||
functionality.
|
||||
</p>
|
||||
</div>
|
||||
</noscript>
|
||||
|
||||
|
||||
<div id="search-results">
|
||||
|
||||
</div>
|
||||
|
||||
</div>
|
||||
|
||||
</div>
|
||||
<footer>
|
||||
|
||||
|
||||
<hr/>
|
||||
|
||||
<div role="contentinfo">
|
||||
<p>
|
||||
© Copyright 2020, Titus Quah, Nwike Iloeje
|
||||
|
||||
</p>
|
||||
</div>
|
||||
Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>.
|
||||
|
||||
</footer>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
|
||||
</section>
|
||||
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
<script type="text/javascript">
|
||||
jQuery(function () {
|
||||
SphinxRtdTheme.Navigation.enable(true);
|
||||
});
|
||||
</script>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<script type="text/javascript">
|
||||
jQuery(function() { Search.loadIndex("searchindex.js"); });
|
||||
</script>
|
||||
|
||||
<script type="text/javascript" id="searchindexloader"></script>
|
||||
|
||||
|
||||
|
||||
</body>
|
||||
</html>
|
||||
File diff suppressed because one or more lines are too long
@ -0,0 +1,35 @@
|
||||
@ECHO OFF
|
||||
|
||||
pushd %~dp0
|
||||
|
||||
REM Command file for Sphinx documentation
|
||||
|
||||
if "%SPHINXBUILD%" == "" (
|
||||
set SPHINXBUILD=sphinx-build
|
||||
)
|
||||
set SOURCEDIR=source
|
||||
set BUILDDIR=build
|
||||
|
||||
if "%1" == "" goto help
|
||||
|
||||
%SPHINXBUILD% >NUL 2>NUL
|
||||
if errorlevel 9009 (
|
||||
echo.
|
||||
echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
|
||||
echo.installed, then set the SPHINXBUILD environment variable to point
|
||||
echo.to the full path of the 'sphinx-build' executable. Alternatively you
|
||||
echo.may add the Sphinx directory to PATH.
|
||||
echo.
|
||||
echo.If you don't have Sphinx installed, grab it from
|
||||
echo.http://sphinx-doc.org/
|
||||
exit /b 1
|
||||
)
|
||||
|
||||
%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
|
||||
goto end
|
||||
|
||||
:help
|
||||
%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
|
||||
|
||||
:end
|
||||
popd
|
||||
@ -0,0 +1,52 @@
|
||||
/* Main colors from https://color.adobe.com/fr/Copy-of-NOUEBO-Original-color-theme-11116609 */
|
||||
:root{
|
||||
--main-bg-color: #324D5C;
|
||||
--link-color: #14B278;
|
||||
}
|
||||
|
||||
/* Header fonts y */
|
||||
h1, h2, .rst-content .toctree-wrapper p.caption, h3, h4, h5, h6, legend, p.caption {
|
||||
font-family: "Lato","proxima-nova","Helvetica Neue",Arial,sans-serif;
|
||||
}
|
||||
|
||||
|
||||
/* Docs background */
|
||||
.wy-side-nav-search{
|
||||
background-color: var(--main-bg-color);
|
||||
}
|
||||
|
||||
/* Mobile version */
|
||||
.wy-nav-top{
|
||||
background-color: var(--main-bg-color);
|
||||
}
|
||||
|
||||
/* Change link colors (except for the menu) */
|
||||
a {
|
||||
color: var(--link-color);
|
||||
}
|
||||
|
||||
a:hover {
|
||||
color: #4F778F;
|
||||
}
|
||||
|
||||
.wy-menu a {
|
||||
color: #b3b3b3;
|
||||
}
|
||||
|
||||
.wy-menu a:hover {
|
||||
color: #b3b3b3;
|
||||
}
|
||||
|
||||
a.icon.icon-home {
|
||||
color: #b3b3b3;
|
||||
}
|
||||
|
||||
.version{
|
||||
color: var(--link-color) !important;
|
||||
}
|
||||
|
||||
|
||||
/* Make code blocks have a background */
|
||||
.codeblock,pre.literal-block,.rst-content .literal-block,.rst-content pre.literal-block,div[class^='highlight'] {
|
||||
background: #f8f8f8;;
|
||||
}
|
||||
|
After Width: | Height: | Size: 27 KiB |
@ -0,0 +1,69 @@
|
||||
# Configuration file for the Sphinx documentation builder.
|
||||
#
|
||||
# This file only contains a selection of the most common options. For a full
|
||||
# list see the documentation:
|
||||
# https://www.sphinx-doc.org/en/master/usage/configuration.html
|
||||
|
||||
# -- Path setup --------------------------------------------------------------
|
||||
|
||||
# If extensions (or modules to document with autodoc) are in another directory,
|
||||
# add these directories to sys.path here. If the directory is relative to the
|
||||
# documentation root, use os.path.abspath to make it absolute, like shown here.
|
||||
#
|
||||
import os
|
||||
import sys
|
||||
|
||||
sys.path.insert(0, os.path.abspath('../../'))
|
||||
|
||||
# -- Project information -----------------------------------------------------
|
||||
|
||||
project = 'reeps'
|
||||
copyright = '2020, Titus Quah, Nwike Iloeje'
|
||||
author = 'Titus Quah, Nwike Iloeje'
|
||||
|
||||
# The full version, including alpha/beta/rc tags
|
||||
release = '1.0.0'
|
||||
|
||||
# -- General configuration ---------------------------------------------------
|
||||
|
||||
# Add any Sphinx extension module names here, as strings. They can be
|
||||
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
|
||||
# ones.
|
||||
|
||||
import sphinx_rtd_theme
|
||||
|
||||
extensions = ["sphinx_rtd_theme",
|
||||
'sphinx.ext.autodoc',
|
||||
'sphinx.ext.autosummary',
|
||||
'sphinx.ext.mathjax',
|
||||
'sphinx.ext.ifconfig',
|
||||
'sphinx.ext.viewcode',
|
||||
]
|
||||
|
||||
# Add any paths that contain templates here, relative to this directory.
|
||||
templates_path = ['_templates']
|
||||
|
||||
# The language for content autogenerated by Sphinx. Refer to documentation
|
||||
# for a list of supported languages.
|
||||
#
|
||||
# This is also used if you do content translation via gettext catalogs.
|
||||
# Usually you set "language" from the command line for these cases.
|
||||
language = 'python'
|
||||
|
||||
# List of patterns, relative to source directory, that match files and
|
||||
# directories to ignore when looking for source files.
|
||||
# This pattern also affects html_static_path and html_extra_path.
|
||||
exclude_patterns = []
|
||||
|
||||
# -- Options for HTML output -------------------------------------------------
|
||||
|
||||
# The theme to use for HTML and HTML Help pages. See the documentation for
|
||||
# a list of builtin themes.
|
||||
#
|
||||
html_theme = "sphinx_rtd_theme"
|
||||
html_logo = '_static/img/logo.png'
|
||||
|
||||
# Add any paths that contain custom static files (such as style sheets) here,
|
||||
# relative to this directory. They are copied after the builtin static files,
|
||||
# so a file named "default.css" will overwrite the builtin "default.css".
|
||||
html_static_path = ['_static']
|
||||
@ -0,0 +1,44 @@
|
||||
.. _install:
|
||||
|
||||
************
|
||||
Installation
|
||||
************
|
||||
|
||||
|
||||
Prerequisites
|
||||
=============
|
||||
|
||||
REEPS requires python3 (>=3.5) with the development headers.
|
||||
|
||||
|
||||
Stable Release
|
||||
==============
|
||||
|
||||
There is currently no stable release
|
||||
|
||||
|
||||
Bleeding-edge version
|
||||
=====================
|
||||
|
||||
To install the latest master version:
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
pip install git+https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git
|
||||
|
||||
|
||||
Development version
|
||||
===================
|
||||
|
||||
To contribute to Stable-Baselines, with support for running tests and building the documentation.
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
git clone https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git && cd parameter-estimation
|
||||
pip install -e .[docs,tests]
|
||||
|
||||
|
||||
Using Docker Images
|
||||
===================
|
||||
|
||||
Not set up yet.
|
||||
@ -0,0 +1,36 @@
|
||||
.. _quickstart:
|
||||
|
||||
***************
|
||||
Getting Started
|
||||
***************
|
||||
|
||||
Here is a quick example of how to fit an xml thermodynamic model to experimental data.
|
||||
|
||||
This code fits Nd standard enthalpy in the "twophase.xml" cantera file to the
|
||||
experimental data in "Nd_exp_data.csv".
|
||||
|
||||
The code then produces a parity plot of the measured and predicted concentrations of Nd 3+ in the
|
||||
aqueous phase.
|
||||
|
||||
.. code-block:: python
|
||||
|
||||
from reeps import REEPS
|
||||
|
||||
searcher_parameters = {'exp_csv_filename': 'Nd_exp_data.csv',
|
||||
'phases_xml_filename': 'twophase.xml',
|
||||
'opt_dict': {'Nd(H(A)2)3(org)': {'h0': -4.7e6}},
|
||||
'phase_names': ['HCl_electrolyte', 'PC88A_liquid'],
|
||||
'aq_solvent_name': 'H2O(L)',
|
||||
'extractant_name': '(HA)2(org)',
|
||||
'diluant_name': 'dodecane',
|
||||
'complex_names': ['Nd(H(A)2)3(org)'],
|
||||
'rare_earth_ion_names': ['Nd+++'],
|
||||
'aq_solvent_rho': 1000.0,
|
||||
'extractant_rho': 960.0,
|
||||
'diluant_rho': 750.0}
|
||||
searcher = REEPS(**searcher_parameters)
|
||||
est_enthalpy = searcher.fit()
|
||||
searcher.update_xml(est_enthalpy)
|
||||
searcher.parity_plot(print_r_squared=True)
|
||||
|
||||
The code should return something like this
|
||||
@ -0,0 +1,39 @@
|
||||
.. reeps documentation master file, created by Titus Quah
|
||||
sphinx-quickstart on Tue Jun 9 10:13:23 2020.
|
||||
You can adapt this file completely to your liking, but it should at least
|
||||
contain the root `toctree` directive.
|
||||
|
||||
Welcome to reeps's docs! - the Rare earth element parameter searcher
|
||||
====================================================================
|
||||
REEPS is a package for thermodynamic parameter estimation specifically
|
||||
for rare earth element extraction modeling.
|
||||
|
||||
REEPS takes experimental data in a csv and system data in a xml.
|
||||
|
||||
The package then uses Cantera, another python package, to simulate equilibrium.
|
||||
|
||||
Error between predicted and experimental data is then minimized.
|
||||
|
||||
.. toctree::
|
||||
:maxdepth: 2
|
||||
:caption: User Guide
|
||||
|
||||
guide/install
|
||||
guide/quickstart
|
||||
|
||||
.. toctree::
|
||||
:maxdepth: 1
|
||||
:caption: Searchers
|
||||
|
||||
modules/reeps
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
Indices and tables
|
||||
==================
|
||||
|
||||
* :ref:`genindex`
|
||||
* :ref:`modindex`
|
||||
* :ref:`search`
|
||||
@ -0,0 +1,15 @@
|
||||
.. _reeps:
|
||||
|
||||
.. automodule:: reeps
|
||||
|
||||
REEPS
|
||||
=====
|
||||
|
||||
|
||||
|
||||
Parameters
|
||||
----------
|
||||
|
||||
.. autoclass:: REEPS
|
||||
:members:
|
||||
:inherited-members:
|
||||
@ -0,0 +1 @@
|
||||
from .reeps import REEPS
|
||||
Binary file not shown.
Binary file not shown.
File diff suppressed because it is too large
Load Diff
@ -0,0 +1,12 @@
|
||||
from setuptools import setup
|
||||
|
||||
setup(
|
||||
name='reeps',
|
||||
version='1.0.0',
|
||||
packages=['tests'],
|
||||
url='',
|
||||
license='',
|
||||
author='Titus Quah',
|
||||
author_email='',
|
||||
description='Rare earth element parameter searcher'
|
||||
)
|
||||
@ -0,0 +1 @@
|
||||
{"exp_csv_filename": "../data/csvs/Nd_exp_data.csv", "phases_xml_filename": "../data/xmls/twophase.xml", "opt_dict": {"Nd(H(A)2)3(org)": {"h0": -4662344.6400}}, "phase_names": ["HCl_electrolyte", "PC88A_liquid"], "aq_solvent_name": "H2O(L)", "extractant_name": "(HA)2(org)", "diluant_name": "dodecane", "complex_names": ["Nd(H(A)2)3(org)"], "rare_earth_ion_names": ["Nd+++"], "aq_solvent_rho": 1000.0, "extractant_rho": 960.0, "diluant_rho": 750.0}
|
||||
Some files were not shown because too many files have changed in this diff Show More
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Reference in new issue