Split Sample.{get,put} into {get,put}_{scalar,vector}

miplearn/features/extractor.py

@@ -33,15 +33,15 @@ class FeaturesExtractor:
     ) -> None:
         variables = solver.get_variables(with_static=True)
         constraints = solver.get_constraints(with_static=True, with_lhs=self.with_lhs)
-        sample.put("var_lower_bounds", variables.lower_bounds)
+        sample.put_vector("var_lower_bounds", variables.lower_bounds)
-        sample.put("var_names", variables.names)
+        sample.put_vector("var_names", variables.names)
-        sample.put("var_obj_coeffs", variables.obj_coeffs)
+        sample.put_vector("var_obj_coeffs", variables.obj_coeffs)
-        sample.put("var_types", variables.types)
+        sample.put_vector("var_types", variables.types)
-        sample.put("var_upper_bounds", variables.upper_bounds)
+        sample.put_vector("var_upper_bounds", variables.upper_bounds)
-        sample.put("constr_names", constraints.names)
+        sample.put_vector("constr_names", constraints.names)
         sample.put("constr_lhs", constraints.lhs)
-        sample.put("constr_rhs", constraints.rhs)
+        sample.put_vector("constr_rhs", constraints.rhs)
-        sample.put("constr_senses", constraints.senses)
+        sample.put_vector("constr_senses", constraints.senses)
         self._extract_user_features_vars(instance, sample)
         self._extract_user_features_constrs(instance, sample)
         self._extract_user_features_instance(instance, sample)
@@ -67,20 +67,20 @@ class FeaturesExtractor:
     ) -> None:
         variables = solver.get_variables(with_static=False, with_sa=self.with_sa)
         constraints = solver.get_constraints(with_static=False, with_sa=self.with_sa)
-        sample.put("lp_var_basis_status", variables.basis_status)
+        sample.put_vector("lp_var_basis_status", variables.basis_status)
-        sample.put("lp_var_reduced_costs", variables.reduced_costs)
+        sample.put_vector("lp_var_reduced_costs", variables.reduced_costs)
-        sample.put("lp_var_sa_lb_down", variables.sa_lb_down)
+        sample.put_vector("lp_var_sa_lb_down", variables.sa_lb_down)
-        sample.put("lp_var_sa_lb_up", variables.sa_lb_up)
+        sample.put_vector("lp_var_sa_lb_up", variables.sa_lb_up)
-        sample.put("lp_var_sa_obj_down", variables.sa_obj_down)
+        sample.put_vector("lp_var_sa_obj_down", variables.sa_obj_down)
-        sample.put("lp_var_sa_obj_up", variables.sa_obj_up)
+        sample.put_vector("lp_var_sa_obj_up", variables.sa_obj_up)
-        sample.put("lp_var_sa_ub_down", variables.sa_ub_down)
+        sample.put_vector("lp_var_sa_ub_down", variables.sa_ub_down)
-        sample.put("lp_var_sa_ub_up", variables.sa_ub_up)
+        sample.put_vector("lp_var_sa_ub_up", variables.sa_ub_up)
-        sample.put("lp_var_values", variables.values)
+        sample.put_vector("lp_var_values", variables.values)
-        sample.put("lp_constr_basis_status", constraints.basis_status)
+        sample.put_vector("lp_constr_basis_status", constraints.basis_status)
-        sample.put("lp_constr_dual_values", constraints.dual_values)
+        sample.put_vector("lp_constr_dual_values", constraints.dual_values)
-        sample.put("lp_constr_sa_rhs_down", constraints.sa_rhs_down)
+        sample.put_vector("lp_constr_sa_rhs_down", constraints.sa_rhs_down)
-        sample.put("lp_constr_sa_rhs_up", constraints.sa_rhs_up)
+        sample.put_vector("lp_constr_sa_rhs_up", constraints.sa_rhs_up)
-        sample.put("lp_constr_slacks", constraints.slacks)
+        sample.put_vector("lp_constr_slacks", constraints.slacks)
         self._extract_var_features_AlvLouWeh2017(sample, prefix="lp_")
         sample.put(
             "lp_var_features",
@@ -134,8 +134,8 @@ class FeaturesExtractor:
     ) -> None:
         variables = solver.get_variables(with_static=False, with_sa=False)
         constraints = solver.get_constraints(with_static=False, with_sa=False)
-        sample.put("mip_var_values", variables.values)
+        sample.put_vector("mip_var_values", variables.values)
-        sample.put("mip_constr_slacks", constraints.slacks)
+        sample.put_vector("mip_constr_slacks", constraints.slacks)
 
     def _extract_user_features_vars(
         self,
@@ -228,7 +228,7 @@ class FeaturesExtractor:
             else:
                 lazy.append(False)
         sample.put("constr_features_user", user_features)
-        sample.put("constr_lazy", lazy)
+        sample.put_vector("constr_lazy", lazy)
         sample.put("constr_categories", categories)
 
     def _extract_user_features_instance(
@@ -251,7 +251,7 @@ class FeaturesExtractor:
         constr_lazy = sample.get("constr_lazy")
         assert constr_lazy is not None
         sample.put("instance_features_user", user_features)
-        sample.put("static_lazy_count", sum(constr_lazy))
+        sample.put_scalar("static_lazy_count", sum(constr_lazy))
 
     # Alvarez, A. M., Louveaux, Q., & Wehenkel, L. (2017). A machine learning-based
     # approximation of strong branching. INFORMS Journal on Computing, 29(1), 185-195.

miplearn/features/sample.py

@@ -3,16 +3,34 @@
 #  Released under the modified BSD license. See COPYING.md for more details.
 
 from abc import ABC, abstractmethod
-from typing import Dict, Optional, Any
+from typing import Dict, Optional, Any, Union, List
 
 import h5py
-import numpy as np
 from overrides import overrides
 
+Scalar = Union[None, bool, str, int, float]
+Vector = Union[None, List[bool], List[str], List[int], List[float]]
+
 
 class Sample(ABC):
     """Abstract dictionary-like class that stores training data."""
 
+    @abstractmethod
+    def get_scalar(self, key: str) -> Optional[Any]:
+        pass
+
+    @abstractmethod
+    def put_scalar(self, key: str, value: Scalar) -> None:
+        pass
+
+    @abstractmethod
+    def get_vector(self, key: str) -> Optional[Any]:
+        pass
+
+    @abstractmethod
+    def put_vector(self, key: str, value: Vector) -> None:
+        pass
+
     @abstractmethod
     def get(self, key: str) -> Optional[Any]:
         pass
@@ -33,6 +51,8 @@ class Sample(ABC):
         def _is_primitive(v: Any) -> bool:
             if isinstance(v, (str, bool, int, float)):
                 return True
+            if v is None:
+                return True
             return False
 
         if _is_primitive(value):
@@ -40,8 +60,23 @@ class Sample(ABC):
         if isinstance(value, list):
             if _is_primitive(value[0]):
                 return
+            if isinstance(value[0], list):
+                if _is_primitive(value[0][0]):
+                    return
         assert False, f"Value has unsupported type: {value}"
 
+    def _assert_scalar(self, value: Any) -> None:
+        if value is None:
+            return
+        if isinstance(value, (str, bool, int, float)):
+            return
+        assert False, f"Scalar expected; found instead: {value}"
+
+    def _assert_vector(self, value: Any) -> None:
+        assert isinstance(value, list), f"List expected; found instead: {value}"
+        for v in value:
+            self._assert_scalar(v)
+
 
 class MemorySample(Sample):
     """Dictionary-like class that stores training data in-memory."""
@@ -54,6 +89,26 @@ class MemorySample(Sample):
             data = {}
         self._data: Dict[str, Any] = data
 
+    @overrides
+    def get_scalar(self, key: str) -> Optional[Any]:
+        return self.get(key)
+
+    @overrides
+    def put_scalar(self, key: str, value: Scalar) -> None:
+        self._assert_scalar(value)
+        self.put(key, value)
+
+    @overrides
+    def get_vector(self, key: str) -> Optional[Any]:
+        return self.get(key)
+
+    @overrides
+    def put_vector(self, key: str, value: Vector) -> None:
+        if value is None:
+            return
+        self._assert_vector(value)
+        self.put(key, value)
+
     @overrides
     def get(self, key: str) -> Optional[Any]:
         if key in self._data:
@@ -63,7 +118,6 @@ class MemorySample(Sample):
 
     @overrides
     def put(self, key: str, value: Any) -> None:
-        # self._assert_supported(value)
         self._data[key] = value
 
 
@@ -78,23 +132,46 @@ class Hdf5Sample(Sample):
     def __init__(self, filename: str) -> None:
         self.file = h5py.File(filename, "r+")
 
+    @overrides
+    def get_scalar(self, key: str) -> Optional[Any]:
+        ds = self.file[key]
+        assert len(ds.shape) == 0
+        if h5py.check_string_dtype(ds.dtype):
+            return ds.asstr()[()]
+        else:
+            return ds[()].tolist()
+
+    @overrides
+    def get_vector(self, key: str) -> Optional[Any]:
+        ds = self.file[key]
+        assert len(ds.shape) == 1
+        if h5py.check_string_dtype(ds.dtype):
+            return ds.asstr()[:].tolist()
+        else:
+            return ds[:].tolist()
+
+    @overrides
+    def put_scalar(self, key: str, value: Any) -> None:
+        self._assert_scalar(value)
+        self.put(key, value)
+
+    @overrides
+    def put_vector(self, key: str, value: Vector) -> None:
+        if value is None:
+            return
+        self._assert_vector(value)
+        self.put(key, value)
+
     @overrides
     def get(self, key: str) -> Optional[Any]:
         ds = self.file[key]
         if h5py.check_string_dtype(ds.dtype):
-            if ds.shape == ():
+            return ds.asstr()[:].tolist()
-                return ds.asstr()[()]
-            else:
-                return ds.asstr()[:].tolist()
         else:
-            if ds.shape == ():
+            return ds[:].tolist()
-                return ds[()].tolist()
-            else:
-                return ds[:].tolist()
 
     @overrides
     def put(self, key: str, value: Any) -> None:
-        self._assert_supported(value)
         if key in self.file:
             del self.file[key]
         self.file.create_dataset(key, data=value)

miplearn/solvers/learning.py

@@ -210,7 +210,7 @@ class LearningSolver:
             logger.info("Extracting features (after-lp)...")
             initial_time = time.time()
             for (k, v) in lp_stats.__dict__.items():
-                sample.put(k, v)
+                sample.put_scalar(k, v)
             self.extractor.extract_after_lp_features(self.internal_solver, sample)
             logger.info(
                 "Features (after-lp) extracted in %.2f seconds"
@@ -278,7 +278,7 @@ class LearningSolver:
         logger.info("Extracting features (after-mip)...")
         initial_time = time.time()
         for (k, v) in mip_stats.__dict__.items():
-            sample.put(k, v)
+            sample.put_scalar(k, v)
         self.extractor.extract_after_mip_features(self.internal_solver, sample)
         logger.info(
             "Features (after-mip) extracted in %.2f seconds"

tests/features/test_sample.py

@@ -7,34 +7,6 @@ from typing import Any
 from miplearn.features.sample import MemorySample, Sample, Hdf5Sample
 
 
-def _test_sample(sample: Sample) -> None:
-    _assert_roundtrip(sample, "A")
-    _assert_roundtrip(sample, True)
-    _assert_roundtrip(sample, 1)
-    _assert_roundtrip(sample, 1.0)
-    _assert_roundtrip(sample, ["A", "BB", "CCC", "こんにちは"])
-    _assert_roundtrip(sample, [True, True, False])
-    _assert_roundtrip(sample, [1, 2, 3])
-    _assert_roundtrip(sample, [1.0, 2.0, 3.0])
-
-
-def _assert_roundtrip(sample: Sample, expected: Any) -> None:
-    sample.put("key", expected)
-    actual = sample.get("key")
-    assert actual == expected
-    assert actual is not None
-    if isinstance(actual, list):
-        assert isinstance(actual[0], expected[0].__class__), (
-            f"Expected class {expected[0].__class__}, "
-            f"found {actual[0].__class__} instead"
-        )
-    else:
-        assert isinstance(actual, expected.__class__), (
-            f"Expected class {expected.__class__}, "
-            f"found class {actual.__class__} instead"
-        )
-
-
 def test_memory_sample() -> None:
     _test_sample(MemorySample())
 
@@ -42,3 +14,51 @@ def test_memory_sample() -> None:
 def test_hdf5_sample() -> None:
     file = NamedTemporaryFile()
     _test_sample(Hdf5Sample(file.name))
+
+
+def _test_sample(sample: Sample) -> None:
+    # Scalar
+    _assert_roundtrip_scalar(sample, "A")
+    _assert_roundtrip_scalar(sample, True)
+    _assert_roundtrip_scalar(sample, 1)
+    _assert_roundtrip_scalar(sample, 1.0)
+
+    # Vector
+    _assert_roundtrip_vector(sample, ["A", "BB", "CCC", "こんにちは"])
+    _assert_roundtrip_vector(sample, [True, True, False])
+    _assert_roundtrip_vector(sample, [1, 2, 3])
+    _assert_roundtrip_vector(sample, [1.0, 2.0, 3.0])
+
+    # List[Optional[List[Primitive]]]
+    # _assert_roundtrip(
+    #     sample,
+    #     [
+    #         [1],
+    #         None,
+    #         [2, 2],
+    #         [3, 3, 3],
+    #     ],
+    # )
+
+
+def _assert_roundtrip_scalar(sample: Sample, expected: Any) -> None:
+    sample.put_scalar("key", expected)
+    actual = sample.get_scalar("key")
+    assert actual == expected
+    assert actual is not None
+    _assert_same_type(actual, expected)
+
+
+def _assert_roundtrip_vector(sample: Sample, expected: Any) -> None:
+    sample.put_vector("key", expected)
+    actual = sample.get_vector("key")
+    assert actual == expected
+    assert actual is not None
+    _assert_same_type(actual[0], expected[0])
+
+
+def _assert_same_type(actual: Any, expected: Any) -> None:
+    assert isinstance(actual, expected.__class__), (
+        f"Expected class {expected.__class__}, "
+        f"found class {actual.__class__} instead"
+    )