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README.md
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@ -8,12 +8,12 @@ LLEPE (Liquid-Liquid Extraction Parameter Estimator) is a toolkit for estimating
To install llepe, clone the repository with the command To install llepe, clone the repository with the command
``` ```
$ git clone https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git $ git clone https://github.com/ANL-CEEESA/LLEPE.git
``` ```
Navigate into the parameter-estimation folder with Navigate into the parameter-estimation folder with
``` ```
cd parameter-estimation cd LLEPE
``` ```
and run the command below in your terminal and run the command below in your terminal
``` ```
@ -27,9 +27,8 @@ $ pip install -e .[docs,tests]
llepe uses packages: cantera (https://cantera.org/), pandas, numpy, scipy, xml, seaborn, and matplotlib llepe uses packages: cantera (https://cantera.org/), pandas, numpy, scipy, xml, seaborn, and matplotlib
## Usage ## Usage
Check out examples in docs/examples Check out examples in docs/_Examples
## Example
Readthedocs documentation are here: https://llepe.readthedocs.io/en/latest/index.html
```python ```python
from llepe import LLEPE from llepe import LLEPE
opt_dict = {'Nd(H(A)2)3(org)_h0': {'upper_element_name': 'species', opt_dict = {'Nd(H(A)2)3(org)_h0': {'upper_element_name': 'species',
@ -58,3 +57,13 @@ est_enthalpy = searcher.fit()
searcher.update_xml(est_enthalpy) searcher.update_xml(est_enthalpy)
searcher.parity_plot(print_r_squared=True) searcher.parity_plot(print_r_squared=True)
``` ```
##Documentation
Readthedocs documentation are here: https://llepe.readthedocs.io/en/latest/index.html
## Acknowledgements
Based upon work supported by funding from Argonne National Laboratory provided by the U.S. Department of Energy, Office of Energy Efficiency and Renewable Energy (EERE), under contract DE-AC02-06CH11357
##Citing LLEPE
If you use LLEPE in your research , we kindly request that you cite the package as follows:
T. Quah and C. O. Iloeje, “Liquid--Liquid Extraction Thermodynamic Parameter Estimator (LLEPE) for Multicomponent Separation Systems,” in Materials Processing Fundamentals 2021, 2021, pp. 107–120, doi: https://doi.org/10.1007/978-3-030-65253-1_9.

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data/__init__.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.

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docs/README.md
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# Documentation
Readthedocs documentation are here: https://llepe.readthedocs.io/en/latest/index.html
## Examples
Check out examples in _Examples folder
## Current limitations
See paper and TODO list in llepe.py

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{ {
"cells": [ "cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"LLEPE: Liquid-Liquid Equilibrium Parameter Estimator\n",
"\n",
"Copyright © 2020, UChicago Argonne, LLC. All rights reserved.\n",
"\n",
"Released under the modified BSD license. See LICENSE for more details."
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
@ -580,7 +591,7 @@
"name": "python", "name": "python",
"nbconvert_exporter": "python", "nbconvert_exporter": "python",
"pygments_lexer": "ipython3", "pygments_lexer": "ipython3",
"version": "3.7.7" "version": "3.7.4"
} }
}, },
"nbformat": 4, "nbformat": 4,

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@ -1,5 +1,16 @@
{ {
"cells": [ "cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"LLEPE: Liquid-Liquid Equilibrium Parameter Estimator\n",
"\n",
"Copyright © 2020, UChicago Argonne, LLC. All rights reserved.\n",
"\n",
"Released under the modified BSD license. See LICENSE for more details."
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
@ -469,7 +480,7 @@
"name": "python", "name": "python",
"nbconvert_exporter": "python", "nbconvert_exporter": "python",
"pygments_lexer": "ipython3", "pygments_lexer": "ipython3",
"version": "3.7.7" "version": "3.7.4"
} }
}, },
"nbformat": 4, "nbformat": 4,

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@ -1,5 +1,16 @@
{ {
"cells": [ "cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"LLEPE: Liquid-Liquid Equilibrium Parameter Estimator\n",
"\n",
"Copyright © 2020, UChicago Argonne, LLC. All rights reserved.\n",
"\n",
"Released under the modified BSD license. See LICENSE for more details."
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
@ -586,7 +597,7 @@
"name": "python", "name": "python",
"nbconvert_exporter": "python", "nbconvert_exporter": "python",
"pygments_lexer": "ipython3", "pygments_lexer": "ipython3",
"version": "3.7.7" "version": "3.7.4"
} }
}, },
"nbformat": 4, "nbformat": 4,

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{ {
"cells": [ "cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"LLEPE: Liquid-Liquid Equilibrium Parameter Estimator\n",
"\n",
"Copyright © 2020, UChicago Argonne, LLC. All rights reserved.\n",
"\n",
"Released under the modified BSD license. See LICENSE for more details."
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
@ -433,7 +444,7 @@
"name": "python", "name": "python",
"nbconvert_exporter": "python", "nbconvert_exporter": "python",
"pygments_lexer": "ipython3", "pygments_lexer": "ipython3",
"version": "3.7.7" "version": "3.7.4"
} }
}, },
"nbformat": 4, "nbformat": 4,

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docs/_Examples/iterative_fitter.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
import llepe import llepe
import pandas as pd import pandas as pd
import numpy as np import numpy as np

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docs/_Examples/iterative_fitter_eval_grapher.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
import llepe import llepe
import pandas as pd import pandas as pd
import numpy as np import numpy as np

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docs/_Examples/iterative_fitter_monitor.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
import matplotlib.pyplot as plt import matplotlib.pyplot as plt
import pandas as pd import pandas as pd

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docs/_Examples/iterative_fitter_w_mse.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
import llepe import llepe
import pandas as pd import pandas as pd
import numpy as np import numpy as np

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docs/_Examples/test_eval.py
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@ -1,3 +1,7 @@
# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
# This file tests adding 0.1 M NaCl to the feed. # This file tests adding 0.1 M NaCl to the feed.
import llepe import llepe
import pandas as pd import pandas as pd

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docs/_source/conf.py
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@ -18,8 +18,8 @@ sys.path.insert(0, os.path.abspath('../../'))
# -- Project information ----------------------------------------------------- # -- Project information -----------------------------------------------------
project = 'LLEPE' project = 'LLEPE'
copyright = '2020, Argonne National Laboratory' copyright = '2020, UChicago Argonne, LLC.'
author = 'Argonne National Laboratory' author = 'UChicago Argonne, LLC.'
master_doc = 'index' master_doc = 'index'
# The full version, including alpha/beta/rc tags # The full version, including alpha/beta/rc tags

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docs/_source/index.rst
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@ -1,9 +1,8 @@
.. reeps documentation master file, created by Titus Quah .. LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
sphinx-quickstart on Tue Jun 9 10:13:23 2020. Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
You can adapt this file completely to your liking, but it should at least Released under the modified BSD license. See LICENSE for more details.
contain the root `toctree` directive.
Welcome to llepe's docs! - the Liquid-Liquid Extraction Parameter Estimator Welcome to LLEPE's docs! - the Liquid-Liquid Extraction Parameter Estimator
=========================================================================== ===========================================================================
LLEPE is a package for thermodynamic parameter estimation for liquid-liquid extraction modeling LLEPE is a package for thermodynamic parameter estimation for liquid-liquid extraction modeling

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docs/about.md
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# About
## Authors
Titus Quah, University of Utah, <titus{dot}quah{at}gmail{dot}com>
Nwike Iloeje, Argonne National Laboratory, <ciloeje{at}anl{dot}gov>
## Acknowledgements
Based upon work supported by funding from Argonne National Laboratory provided by the U.S. Department of Energy, Office of Energy Efficiency and Renewable Energy (EERE), under contract DE-AC02-06CH11357
## References
If you use LLEPE in your research , we kindly request that you cite the package as follows:
T. Quah and C. O. Iloeje, “Liquid--Liquid Extraction Thermodynamic Parameter Estimator (LLEPE) for Multicomponent Separation Systems,” in Materials Processing Fundamentals 2021, 2021, pp. 107–120, doi: https://doi.org/10.1007/978-3-030-65253-1_9.
##License
```
Copyright © 2020, UChicago Argonne, LLC
All Rights Reserved
Software Name: LLEPE
By: Argonne National Laboratory, University of Utah
OPEN SOURCE LICENSE
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
3. Neither the name of the copyright holder nor the names of its contributors
may be used to endorse or promote products derived from this software without
specific prior written permission.
******************************************************************************************************
DISCLAIMER
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY
OF SUCH DAMAGE.
***************************************************************************************************
```

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# Sphinx build info version 1 # Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 64e91a3bc75e7eda68c23d7400e11773 config: fdde7da710e99305b2f90b2ffb8f91ce
tags: 645f666f9bcd5a90fca523b33c5a78b7 tags: 645f666f9bcd5a90fca523b33c5a78b7

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@ -85,10 +85,11 @@
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="../guide/install.html">Installation</a></li> <li class="toctree-l1"><a class="reference internal" href="../guide/install.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="../guide/quickstart.html">Getting Started</a></li> <li class="toctree-l1"><a class="reference internal" href="../guide/quickstart.html">Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="../guide/about.html">About</a></li>
</ul> </ul>
<p class="caption"><span class="caption-text">Searchers</span></p> <p class="caption"><span class="caption-text">Searchers</span></p>
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="../modules/reeps.html">LLEPE</a></li> <li class="toctree-l1"><a class="reference internal" href="../modules/LLEPE.html">LLEPE</a></li>
</ul> </ul>
@ -163,7 +164,7 @@
<div role="contentinfo"> <div role="contentinfo">
<p> <p>
&copy; Copyright 2020, Argonne National Laboratory &copy; Copyright 2020, UChicago Argonne, LLC.
</p> </p>
</div> </div>

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@ -85,10 +85,11 @@
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="../../guide/install.html">Installation</a></li> <li class="toctree-l1"><a class="reference internal" href="../../guide/install.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../guide/quickstart.html">Getting Started</a></li> <li class="toctree-l1"><a class="reference internal" href="../../guide/quickstart.html">Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../guide/about.html">About</a></li>
</ul> </ul>
<p class="caption"><span class="caption-text">Searchers</span></p> <p class="caption"><span class="caption-text">Searchers</span></p>
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="../../modules/reeps.html">LLEPE</a></li> <li class="toctree-l1"><a class="reference internal" href="../../modules/LLEPE.html">LLEPE</a></li>
</ul> </ul>
@ -169,7 +170,7 @@
<span class="kn">from</span> <span class="nn">.utils</span> <span class="kn">import</span> <span class="n">set_size</span> <span class="kn">from</span> <span class="nn">.utils</span> <span class="kn">import</span> <span class="n">set_size</span>
<div class="viewcode-block" id="LLEPE"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE">[docs]</a><span class="k">class</span> <span class="nc">LLEPE</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE">[docs]</a><span class="k">class</span> <span class="nc">LLEPE</span><span class="p">:</span>
<span class="sa">r</span><span class="sd">&quot;&quot;&quot;</span> <span class="sa">r</span><span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Liquid-Liquid Extraction Parameter estimator</span> <span class="sd"> Liquid-Liquid Extraction Parameter estimator</span>
@ -527,7 +528,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">update_predicted_dict</span><span class="p">()</span> <span class="bp">self</span><span class="o">.</span><span class="n">update_predicted_dict</span><span class="p">()</span>
<span class="c1"># TODO: move scipy_minimize to optimizers</span> <span class="c1"># TODO: move scipy_minimize to optimizers</span>
<div class="viewcode-block" id="LLEPE.scipy_minimize"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.scipy_minimize">[docs]</a> <span class="nd">@staticmethod</span> <div class="viewcode-block" id="LLEPE.scipy_minimize"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.scipy_minimize">[docs]</a> <span class="nd">@staticmethod</span>
<span class="k">def</span> <span class="nf">scipy_minimize</span><span class="p">(</span><span class="n">objective</span><span class="p">,</span> <span class="n">x_guess</span><span class="p">,</span> <span class="n">optimizer_kwargs</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span> <span class="k">def</span> <span class="nf">scipy_minimize</span><span class="p">(</span><span class="n">objective</span><span class="p">,</span> <span class="n">x_guess</span><span class="p">,</span> <span class="n">optimizer_kwargs</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot; The default optimizer for LLEPE</span> <span class="sd">&quot;&quot;&quot; The default optimizer for LLEPE</span>
@ -562,7 +563,7 @@
<span class="k">return</span> <span class="n">est_parameters</span><span class="p">,</span> <span class="n">res</span><span class="o">.</span><span class="n">fun</span></div> <span class="k">return</span> <span class="n">est_parameters</span><span class="p">,</span> <span class="n">res</span><span class="o">.</span><span class="n">fun</span></div>
<span class="c1"># TODO: move log_mean_squared_error to objectives</span> <span class="c1"># TODO: move log_mean_squared_error to objectives</span>
<div class="viewcode-block" id="LLEPE.log_mean_squared_error"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.log_mean_squared_error">[docs]</a> <span class="k">def</span> <span class="nf">log_mean_squared_error</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">predicted_dict</span><span class="p">,</span> <span class="n">meas_df</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.log_mean_squared_error"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.log_mean_squared_error">[docs]</a> <span class="k">def</span> <span class="nf">log_mean_squared_error</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">predicted_dict</span><span class="p">,</span> <span class="n">meas_df</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Default objective function for LLEPE</span> <span class="sd">&quot;&quot;&quot;Default objective function for LLEPE</span>
<span class="sd"> Returns the log mean squared error of</span> <span class="sd"> Returns the log mean squared error of</span>
@ -586,14 +587,14 @@
<span class="n">obj</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">log_diff</span><span class="p">)</span> <span class="n">obj</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">log_diff</span><span class="p">)</span>
<span class="k">return</span> <span class="n">obj</span></div> <span class="k">return</span> <span class="n">obj</span></div>
<div class="viewcode-block" id="LLEPE.get_exp_df"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_exp_df">[docs]</a> <span class="k">def</span> <span class="nf">get_exp_df</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_exp_df"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_exp_df">[docs]</a> <span class="k">def</span> <span class="nf">get_exp_df</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Returns the experimental DataFrame</span> <span class="sd">&quot;&quot;&quot;Returns the experimental DataFrame</span>
<span class="sd"> :return: (pd.DataFrame) Experimental data</span> <span class="sd"> :return: (pd.DataFrame) Experimental data</span>
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_exp_df</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_exp_df</span></div>
<div class="viewcode-block" id="LLEPE.set_exp_df"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_exp_df">[docs]</a> <span class="k">def</span> <span class="nf">set_exp_df</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">exp_data</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_exp_df"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_exp_df">[docs]</a> <span class="k">def</span> <span class="nf">set_exp_df</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">exp_data</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Changes the experimental DataFrame to input exp_csv_filename data</span> <span class="sd">&quot;&quot;&quot;Changes the experimental DataFrame to input exp_csv_filename data</span>
<span class="sd"> and renames columns to internal LLEPE names</span> <span class="sd"> and renames columns to internal LLEPE names</span>
@ -634,7 +635,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">update_predicted_dict</span><span class="p">()</span> <span class="bp">self</span><span class="o">.</span><span class="n">update_predicted_dict</span><span class="p">()</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_phases"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_phases">[docs]</a> <span class="k">def</span> <span class="nf">get_phases</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_phases"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_phases">[docs]</a> <span class="k">def</span> <span class="nf">get_phases</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;</span> <span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Returns the list of Cantera solutions</span> <span class="sd"> Returns the list of Cantera solutions</span>
@ -642,7 +643,7 @@
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_phases</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_phases</span></div>
<div class="viewcode-block" id="LLEPE.set_phases"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_phases">[docs]</a> <span class="k">def</span> <span class="nf">set_phases</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">phases_xml_filename</span><span class="p">,</span> <span class="n">phase_names</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_phases"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_phases">[docs]</a> <span class="k">def</span> <span class="nf">set_phases</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">phases_xml_filename</span><span class="p">,</span> <span class="n">phase_names</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Change list of Cantera solutions by inputting</span> <span class="sd">&quot;&quot;&quot;Change list of Cantera solutions by inputting</span>
<span class="sd"> new xml file name and phase names</span> <span class="sd"> new xml file name and phase names</span>
@ -675,7 +676,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">update_predicted_dict</span><span class="p">()</span> <span class="bp">self</span><span class="o">.</span><span class="n">update_predicted_dict</span><span class="p">()</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_opt_dict"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_opt_dict">[docs]</a> <span class="k">def</span> <span class="nf">get_opt_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_opt_dict"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_opt_dict">[docs]</a> <span class="k">def</span> <span class="nf">get_opt_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;</span> <span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Returns the dictionary containing optimization information</span> <span class="sd"> Returns the dictionary containing optimization information</span>
@ -684,7 +685,7 @@
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_opt_dict</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_opt_dict</span></div>
<div class="viewcode-block" id="LLEPE.set_opt_dict"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_opt_dict">[docs]</a> <span class="k">def</span> <span class="nf">set_opt_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">opt_dict</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_opt_dict"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_opt_dict">[docs]</a> <span class="k">def</span> <span class="nf">set_opt_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">opt_dict</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;</span> <span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Change the dictionary to input opt_dict.</span> <span class="sd"> Change the dictionary to input opt_dict.</span>
@ -700,14 +701,14 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_opt_dict</span> <span class="o">=</span> <span class="n">opt_dict</span> <span class="bp">self</span><span class="o">.</span><span class="n">_opt_dict</span> <span class="o">=</span> <span class="n">opt_dict</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_aq_solvent_name"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_aq_solvent_name">[docs]</a> <span class="k">def</span> <span class="nf">get_aq_solvent_name</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_aq_solvent_name"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_aq_solvent_name">[docs]</a> <span class="k">def</span> <span class="nf">get_aq_solvent_name</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Returns aq_solvent_name</span> <span class="sd">&quot;&quot;&quot;Returns aq_solvent_name</span>
<span class="sd"> :return: aq_solvent_name: (str) name of aqueous solvent in xml file</span> <span class="sd"> :return: aq_solvent_name: (str) name of aqueous solvent in xml file</span>
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_aq_solvent_name</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_aq_solvent_name</span></div>
<div class="viewcode-block" id="LLEPE.set_aq_solvent_name"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_aq_solvent_name">[docs]</a> <span class="k">def</span> <span class="nf">set_aq_solvent_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">aq_solvent_name</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_aq_solvent_name"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_aq_solvent_name">[docs]</a> <span class="k">def</span> <span class="nf">set_aq_solvent_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">aq_solvent_name</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot; Change aq_solvent_name to input aq_solvent_name</span> <span class="sd">&quot;&quot;&quot; Change aq_solvent_name to input aq_solvent_name</span>
<span class="sd"> :param aq_solvent_name: (str) name of aqueous solvent in xml file</span> <span class="sd"> :param aq_solvent_name: (str) name of aqueous solvent in xml file</span>
@ -715,14 +716,14 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_aq_solvent_name</span> <span class="o">=</span> <span class="n">aq_solvent_name</span> <span class="bp">self</span><span class="o">.</span><span class="n">_aq_solvent_name</span> <span class="o">=</span> <span class="n">aq_solvent_name</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_extractant_name"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_extractant_name">[docs]</a> <span class="k">def</span> <span class="nf">get_extractant_name</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_extractant_name"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_extractant_name">[docs]</a> <span class="k">def</span> <span class="nf">get_extractant_name</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Returns extractant name</span> <span class="sd">&quot;&quot;&quot;Returns extractant name</span>
<span class="sd"> :return: extractant_name: (str) name of extractant in xml file</span> <span class="sd"> :return: extractant_name: (str) name of extractant in xml file</span>
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extractant_name</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extractant_name</span></div>
<div class="viewcode-block" id="LLEPE.set_extractant_name"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_extractant_name">[docs]</a> <span class="k">def</span> <span class="nf">set_extractant_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">extractant_name</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_extractant_name"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_extractant_name">[docs]</a> <span class="k">def</span> <span class="nf">set_extractant_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">extractant_name</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;</span> <span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Change extractant_name to input extractant_name</span> <span class="sd"> Change extractant_name to input extractant_name</span>
<span class="sd"> :param extractant_name: (str) name of extractant in xml file</span> <span class="sd"> :param extractant_name: (str) name of extractant in xml file</span>
@ -730,13 +731,13 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_extractant_name</span> <span class="o">=</span> <span class="n">extractant_name</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extractant_name</span> <span class="o">=</span> <span class="n">extractant_name</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_diluant_name"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_diluant_name">[docs]</a> <span class="k">def</span> <span class="nf">get_diluant_name</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_diluant_name"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_diluant_name">[docs]</a> <span class="k">def</span> <span class="nf">get_diluant_name</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot; Returns diluant name</span> <span class="sd">&quot;&quot;&quot; Returns diluant name</span>
<span class="sd"> :return: diluant_name: (str) name of diluant in xml file</span> <span class="sd"> :return: diluant_name: (str) name of diluant in xml file</span>
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_diluant_name</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_diluant_name</span></div>
<div class="viewcode-block" id="LLEPE.set_diluant_name"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_diluant_name">[docs]</a> <span class="k">def</span> <span class="nf">set_diluant_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">diluant_name</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_diluant_name"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_diluant_name">[docs]</a> <span class="k">def</span> <span class="nf">set_diluant_name</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">diluant_name</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;</span> <span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Change diluant_name to input diluant_name</span> <span class="sd"> Change diluant_name to input diluant_name</span>
@ -745,14 +746,14 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_diluant_name</span> <span class="o">=</span> <span class="n">diluant_name</span> <span class="bp">self</span><span class="o">.</span><span class="n">_diluant_name</span> <span class="o">=</span> <span class="n">diluant_name</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_complex_names"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_complex_names">[docs]</a> <span class="k">def</span> <span class="nf">get_complex_names</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_complex_names"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_complex_names">[docs]</a> <span class="k">def</span> <span class="nf">get_complex_names</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Returns list of complex names</span> <span class="sd">&quot;&quot;&quot;Returns list of complex names</span>
<span class="sd"> :return: complex_names: (list) names of complexes in xml file.</span> <span class="sd"> :return: complex_names: (list) names of complexes in xml file.</span>
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_complex_names</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_complex_names</span></div>
<div class="viewcode-block" id="LLEPE.set_complex_names"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_complex_names">[docs]</a> <span class="k">def</span> <span class="nf">set_complex_names</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">complex_names</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_complex_names"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_complex_names">[docs]</a> <span class="k">def</span> <span class="nf">set_complex_names</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">complex_names</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Change complex names list to input complex_names</span> <span class="sd">&quot;&quot;&quot;Change complex names list to input complex_names</span>
<span class="sd"> :param complex_names: (list) names of complexes in xml file.</span> <span class="sd"> :param complex_names: (list) names of complexes in xml file.</span>
@ -760,7 +761,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_complex_names</span> <span class="o">=</span> <span class="n">complex_names</span> <span class="bp">self</span><span class="o">.</span><span class="n">_complex_names</span> <span class="o">=</span> <span class="n">complex_names</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_extracted_species_ion_names"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_extracted_species_ion_names">[docs]</a> <span class="k">def</span> <span class="nf">get_extracted_species_ion_names</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_extracted_species_ion_names"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_extracted_species_ion_names">[docs]</a> <span class="k">def</span> <span class="nf">get_extracted_species_ion_names</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Returns list of extracted species ion names</span> <span class="sd">&quot;&quot;&quot;Returns list of extracted species ion names</span>
<span class="sd"> :return: extracted_species_ion_names: (list) names of</span> <span class="sd"> :return: extracted_species_ion_names: (list) names of</span>
@ -768,7 +769,7 @@
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extracted_species_ion_names</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extracted_species_ion_names</span></div>
<div class="viewcode-block" id="LLEPE.set_extracted_species_ion_names"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_extracted_species_ion_names">[docs]</a> <span class="k">def</span> <span class="nf">set_extracted_species_ion_names</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">extracted_species_ion_names</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_extracted_species_ion_names"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_extracted_species_ion_names">[docs]</a> <span class="k">def</span> <span class="nf">set_extracted_species_ion_names</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">extracted_species_ion_names</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Change list of extracted species ion names to input</span> <span class="sd">&quot;&quot;&quot;Change list of extracted species ion names to input</span>
<span class="sd"> extracted_species_ion_names</span> <span class="sd"> extracted_species_ion_names</span>
@ -778,7 +779,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_extracted_species_ion_names</span> <span class="o">=</span> <span class="n">extracted_species_ion_names</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extracted_species_ion_names</span> <span class="o">=</span> <span class="n">extracted_species_ion_names</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_extracted_species_list"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_extracted_species_list">[docs]</a> <span class="k">def</span> <span class="nf">get_extracted_species_list</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_extracted_species_list"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_extracted_species_list">[docs]</a> <span class="k">def</span> <span class="nf">get_extracted_species_list</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">list</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Returns list of extracted species names</span> <span class="sd">&quot;&quot;&quot;Returns list of extracted species names</span>
<span class="sd"> :return: extracted_species_list: (list) names of extracted species in</span> <span class="sd"> :return: extracted_species_list: (list) names of extracted species in</span>
@ -786,7 +787,7 @@
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extracted_species_list</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extracted_species_list</span></div>
<div class="viewcode-block" id="LLEPE.set_extracted_species_list"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_extracted_species_list">[docs]</a> <span class="k">def</span> <span class="nf">set_extracted_species_list</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">extracted_species_list</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_extracted_species_list"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_extracted_species_list">[docs]</a> <span class="k">def</span> <span class="nf">set_extracted_species_list</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">extracted_species_list</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Change list of extracted species ion names to input</span> <span class="sd">&quot;&quot;&quot;Change list of extracted species ion names to input</span>
<span class="sd"> extracted_species_ion_names</span> <span class="sd"> extracted_species_ion_names</span>
@ -796,14 +797,14 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_extracted_species_list</span> <span class="o">=</span> <span class="n">extracted_species_list</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extracted_species_list</span> <span class="o">=</span> <span class="n">extracted_species_list</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_aq_solvent_rho"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_aq_solvent_rho">[docs]</a> <span class="k">def</span> <span class="nf">get_aq_solvent_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_aq_solvent_rho"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_aq_solvent_rho">[docs]</a> <span class="k">def</span> <span class="nf">get_aq_solvent_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Returns aqueous solvent density (g/L)</span> <span class="sd">&quot;&quot;&quot;Returns aqueous solvent density (g/L)</span>
<span class="sd"> :return: aq_solvent_rho: (float) density of aqueous solvent</span> <span class="sd"> :return: aq_solvent_rho: (float) density of aqueous solvent</span>
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_aq_solvent_rho</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_aq_solvent_rho</span></div>
<div class="viewcode-block" id="LLEPE.set_aq_solvent_rho"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_aq_solvent_rho">[docs]</a> <span class="k">def</span> <span class="nf">set_aq_solvent_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">aq_solvent_rho</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_aq_solvent_rho"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_aq_solvent_rho">[docs]</a> <span class="k">def</span> <span class="nf">set_aq_solvent_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">aq_solvent_rho</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Changes aqueous solvent density (g/L) to input aq_solvent_rho</span> <span class="sd">&quot;&quot;&quot;Changes aqueous solvent density (g/L) to input aq_solvent_rho</span>
<span class="sd"> :param aq_solvent_rho: (float) density of aqueous solvent</span> <span class="sd"> :param aq_solvent_rho: (float) density of aqueous solvent</span>
@ -811,14 +812,14 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_aq_solvent_rho</span> <span class="o">=</span> <span class="n">aq_solvent_rho</span> <span class="bp">self</span><span class="o">.</span><span class="n">_aq_solvent_rho</span> <span class="o">=</span> <span class="n">aq_solvent_rho</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_extractant_rho"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_extractant_rho">[docs]</a> <span class="k">def</span> <span class="nf">get_extractant_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_extractant_rho"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_extractant_rho">[docs]</a> <span class="k">def</span> <span class="nf">get_extractant_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Returns extractant density (g/L)</span> <span class="sd">&quot;&quot;&quot;Returns extractant density (g/L)</span>
<span class="sd"> :return: extractant_rho: (float) density of extractant</span> <span class="sd"> :return: extractant_rho: (float) density of extractant</span>
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extractant_rho</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extractant_rho</span></div>
<div class="viewcode-block" id="LLEPE.set_extractant_rho"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_extractant_rho">[docs]</a> <span class="k">def</span> <span class="nf">set_extractant_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">extractant_rho</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_extractant_rho"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_extractant_rho">[docs]</a> <span class="k">def</span> <span class="nf">set_extractant_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">extractant_rho</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Changes extractant density (g/L) to input extractant_rho</span> <span class="sd">&quot;&quot;&quot;Changes extractant density (g/L) to input extractant_rho</span>
<span class="sd"> :param extractant_rho: (float) density of extractant</span> <span class="sd"> :param extractant_rho: (float) density of extractant</span>
@ -826,14 +827,14 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_extractant_rho</span> <span class="o">=</span> <span class="n">extractant_rho</span> <span class="bp">self</span><span class="o">.</span><span class="n">_extractant_rho</span> <span class="o">=</span> <span class="n">extractant_rho</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_diluant_rho"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_diluant_rho">[docs]</a> <span class="k">def</span> <span class="nf">get_diluant_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_diluant_rho"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_diluant_rho">[docs]</a> <span class="k">def</span> <span class="nf">get_diluant_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">str</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Returns diluant density (g/L)</span> <span class="sd">&quot;&quot;&quot;Returns diluant density (g/L)</span>
<span class="sd"> :return: diluant_rho: (float) density of diluant</span> <span class="sd"> :return: diluant_rho: (float) density of diluant</span>
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_diluant_rho</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_diluant_rho</span></div>
<div class="viewcode-block" id="LLEPE.set_diluant_rho"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_diluant_rho">[docs]</a> <span class="k">def</span> <span class="nf">set_diluant_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">diluant_rho</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_diluant_rho"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_diluant_rho">[docs]</a> <span class="k">def</span> <span class="nf">set_diluant_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">diluant_rho</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Changes diluant density (g/L) to input diluant_rho</span> <span class="sd">&quot;&quot;&quot;Changes diluant density (g/L) to input diluant_rho</span>
<span class="sd"> :param diluant_rho: (float) density of diluant</span> <span class="sd"> :param diluant_rho: (float) density of diluant</span>
@ -846,7 +847,7 @@
<span class="c1"># TODO: Change DataFrame structure to contain info about O/A ratio</span> <span class="c1"># TODO: Change DataFrame structure to contain info about O/A ratio</span>
<span class="c1"># TODO: Generalize code to more than just org and aq phase (3+ phases)</span> <span class="c1"># TODO: Generalize code to more than just org and aq phase (3+ phases)</span>
<span class="c1"># TODO: Handle multiple electrolytes ie. NO3- with Cl-</span> <span class="c1"># TODO: Handle multiple electrolytes ie. NO3- with Cl-</span>
<div class="viewcode-block" id="LLEPE.set_in_moles"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_in_moles">[docs]</a> <span class="k">def</span> <span class="nf">set_in_moles</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">feed_vol</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_in_moles"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_in_moles">[docs]</a> <span class="k">def</span> <span class="nf">set_in_moles</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">feed_vol</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Function that initializes mole fractions to input feed_vol</span> <span class="sd">&quot;&quot;&quot;Function that initializes mole fractions to input feed_vol</span>
<span class="sd"> This function is called at initialization</span> <span class="sd"> This function is called at initialization</span>
@ -953,7 +954,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">update_predicted_dict</span><span class="p">()</span> <span class="bp">self</span><span class="o">.</span><span class="n">update_predicted_dict</span><span class="p">()</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_in_moles"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_in_moles">[docs]</a> <span class="k">def</span> <span class="nf">get_in_moles</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">:</span> <div class="viewcode-block" id="LLEPE.get_in_moles"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_in_moles">[docs]</a> <span class="k">def</span> <span class="nf">get_in_moles</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">:</span>
<span class="sd">&quot;&quot;&quot;Returns the in_moles DataFrame which contains the initial mole</span> <span class="sd">&quot;&quot;&quot;Returns the in_moles DataFrame which contains the initial mole</span>
<span class="sd"> fractions of each species for each experiment</span> <span class="sd"> fractions of each species for each experiment</span>
@ -961,7 +962,7 @@
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_in_moles</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_in_moles</span></div>
<div class="viewcode-block" id="LLEPE.set_objective_function"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_objective_function">[docs]</a> <span class="k">def</span> <span class="nf">set_objective_function</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">objective_function</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_objective_function"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_objective_function">[docs]</a> <span class="k">def</span> <span class="nf">set_objective_function</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">objective_function</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Change objective function to input objective_function.</span> <span class="sd">&quot;&quot;&quot;Change objective function to input objective_function.</span>
<span class="sd"> See class docstring on &quot;objective_function&quot; for instructions</span> <span class="sd"> See class docstring on &quot;objective_function&quot; for instructions</span>
@ -986,7 +987,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_objective_function</span> <span class="o">=</span> <span class="n">objective_function</span> <span class="bp">self</span><span class="o">.</span><span class="n">_objective_function</span> <span class="o">=</span> <span class="n">objective_function</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_objective_function"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_objective_function">[docs]</a> <span class="k">def</span> <span class="nf">get_objective_function</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.get_objective_function"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_objective_function">[docs]</a> <span class="k">def</span> <span class="nf">get_objective_function</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Returns objective function</span> <span class="sd">&quot;&quot;&quot;Returns objective function</span>
<span class="sd"> :return: objective_function: (func) Objective function to quantify</span> <span class="sd"> :return: objective_function: (func) Objective function to quantify</span>
@ -994,7 +995,7 @@
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_objective_function</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_objective_function</span></div>
<div class="viewcode-block" id="LLEPE.set_optimizer"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_optimizer">[docs]</a> <span class="k">def</span> <span class="nf">set_optimizer</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">optimizer</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_optimizer"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_optimizer">[docs]</a> <span class="k">def</span> <span class="nf">set_optimizer</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">optimizer</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Change optimizer function to input optimizer.</span> <span class="sd">&quot;&quot;&quot;Change optimizer function to input optimizer.</span>
<span class="sd"> See class docstring on &quot;optimizer&quot; for instructions</span> <span class="sd"> See class docstring on &quot;optimizer&quot; for instructions</span>
@ -1019,7 +1020,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_optimizer</span> <span class="o">=</span> <span class="n">optimizer</span> <span class="bp">self</span><span class="o">.</span><span class="n">_optimizer</span> <span class="o">=</span> <span class="n">optimizer</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_optimizer"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_optimizer">[docs]</a> <span class="k">def</span> <span class="nf">get_optimizer</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.get_optimizer"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_optimizer">[docs]</a> <span class="k">def</span> <span class="nf">get_optimizer</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Returns objective function</span> <span class="sd">&quot;&quot;&quot;Returns objective function</span>
<span class="sd"> :return: optimizer: (func) Optimizer function to minimize objective</span> <span class="sd"> :return: optimizer: (func) Optimizer function to minimize objective</span>
@ -1027,7 +1028,7 @@
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_optimizer</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_optimizer</span></div>
<div class="viewcode-block" id="LLEPE.get_temp_xml_file_path"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_temp_xml_file_path">[docs]</a> <span class="k">def</span> <span class="nf">get_temp_xml_file_path</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.get_temp_xml_file_path"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_temp_xml_file_path">[docs]</a> <span class="k">def</span> <span class="nf">get_temp_xml_file_path</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Returns path to temporary xml file.</span> <span class="sd">&quot;&quot;&quot;Returns path to temporary xml file.</span>
<span class="sd"> This xml file is a duplicate of the phases_xml_file name and is</span> <span class="sd"> This xml file is a duplicate of the phases_xml_file name and is</span>
@ -1038,7 +1039,7 @@
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_temp_xml_file_path</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_temp_xml_file_path</span></div>
<div class="viewcode-block" id="LLEPE.set_temp_xml_file_path"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_temp_xml_file_path">[docs]</a> <span class="k">def</span> <span class="nf">set_temp_xml_file_path</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">temp_xml_file_path</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_temp_xml_file_path"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_temp_xml_file_path">[docs]</a> <span class="k">def</span> <span class="nf">set_temp_xml_file_path</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">temp_xml_file_path</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Changes temporary xml file path to input temp_xml_file_path.</span> <span class="sd">&quot;&quot;&quot;Changes temporary xml file path to input temp_xml_file_path.</span>
<span class="sd"> This xml file is a duplicate of the phases_xml_file name and is</span> <span class="sd"> This xml file is a duplicate of the phases_xml_file name and is</span>
@ -1050,7 +1051,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_temp_xml_file_path</span> <span class="o">=</span> <span class="n">temp_xml_file_path</span> <span class="bp">self</span><span class="o">.</span><span class="n">_temp_xml_file_path</span> <span class="o">=</span> <span class="n">temp_xml_file_path</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_dependant_params_dict"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_dependant_params_dict">[docs]</a> <span class="k">def</span> <span class="nf">get_dependant_params_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.get_dependant_params_dict"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_dependant_params_dict">[docs]</a> <span class="k">def</span> <span class="nf">get_dependant_params_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;</span> <span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Returns the dependant_params_dict</span> <span class="sd"> Returns the dependant_params_dict</span>
@ -1059,7 +1060,7 @@
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dependant_params_dict</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dependant_params_dict</span></div>
<div class="viewcode-block" id="LLEPE.set_dependant_params_dict"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_dependant_params_dict">[docs]</a> <span class="k">def</span> <span class="nf">set_dependant_params_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dependant_params_dict</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_dependant_params_dict"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_dependant_params_dict">[docs]</a> <span class="k">def</span> <span class="nf">set_dependant_params_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dependant_params_dict</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;</span> <span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Sets the dependant_params_dict</span> <span class="sd"> Sets the dependant_params_dict</span>
@ -1069,7 +1070,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_dependant_params_dict</span> <span class="o">=</span> <span class="n">dependant_params_dict</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dependant_params_dict</span> <span class="o">=</span> <span class="n">dependant_params_dict</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_custom_objects_dict"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_custom_objects_dict">[docs]</a> <span class="k">def</span> <span class="nf">get_custom_objects_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.get_custom_objects_dict"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_custom_objects_dict">[docs]</a> <span class="k">def</span> <span class="nf">get_custom_objects_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;</span> <span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Returns the custom_objects_dict</span> <span class="sd"> Returns the custom_objects_dict</span>
@ -1078,7 +1079,7 @@
<span class="sd"> &quot;&quot;&quot;</span> <span class="sd"> &quot;&quot;&quot;</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_custom_objects_dict</span></div> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_custom_objects_dict</span></div>
<div class="viewcode-block" id="LLEPE.set_custom_objects_dict"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.set_custom_objects_dict">[docs]</a> <span class="k">def</span> <span class="nf">set_custom_objects_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">custom_objects_dict</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.set_custom_objects_dict"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.set_custom_objects_dict">[docs]</a> <span class="k">def</span> <span class="nf">set_custom_objects_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">custom_objects_dict</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;</span> <span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> Sets the custom_objects_dict</span> <span class="sd"> Sets the custom_objects_dict</span>
@ -1092,7 +1093,7 @@
<span class="c1"># equilibrium pH to measured value. Will be useful for saponification</span> <span class="c1"># equilibrium pH to measured value. Will be useful for saponification</span>
<span class="c1"># TODO: Find way to add saponification to model.</span> <span class="c1"># TODO: Find way to add saponification to model.</span>
<span class="c1"># Maybe use fsolve to match experimental equilibrium pH</span> <span class="c1"># Maybe use fsolve to match experimental equilibrium pH</span>
<div class="viewcode-block" id="LLEPE.update_predicted_dict"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.update_predicted_dict">[docs]</a> <span class="k">def</span> <span class="nf">update_predicted_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <div class="viewcode-block" id="LLEPE.update_predicted_dict"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.update_predicted_dict">[docs]</a> <span class="k">def</span> <span class="nf">update_predicted_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
<span class="n">phases_xml_filename</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">phases_xml_filename</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">phase_names</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span> <span class="n">phase_names</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Function that computes the predicted equilibrium concentrations</span> <span class="sd">&quot;&quot;&quot;Function that computes the predicted equilibrium concentrations</span>
@ -1159,7 +1160,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_predicted_dict</span> <span class="o">=</span> <span class="n">predicted_dict</span> <span class="bp">self</span><span class="o">.</span><span class="n">_predicted_dict</span> <span class="o">=</span> <span class="n">predicted_dict</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.get_predicted_dict"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.get_predicted_dict">[docs]</a> <span class="k">def</span> <span class="nf">get_predicted_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.get_predicted_dict"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.get_predicted_dict">[docs]</a> <span class="k">def</span> <span class="nf">get_predicted_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Returns predicted dictionary of species concentrations</span> <span class="sd">&quot;&quot;&quot;Returns predicted dictionary of species concentrations</span>
<span class="sd"> that xml parameters predicts given current in_moles</span> <span class="sd"> that xml parameters predicts given current in_moles</span>
@ -1223,7 +1224,7 @@
<span class="n">objective_values</span> <span class="o">=</span> <span class="n">objective_values</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="n">objective_values</span> <span class="o">=</span> <span class="n">objective_values</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
<span class="k">return</span> <span class="n">objective_values</span> <span class="k">return</span> <span class="n">objective_values</span>
<div class="viewcode-block" id="LLEPE.fit"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.fit">[docs]</a> <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <div class="viewcode-block" id="LLEPE.fit"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.fit">[docs]</a> <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
<span class="n">objective_function</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">objective_function</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">optimizer</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">optimizer</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">objective_kwargs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">objective_kwargs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
@ -1266,7 +1267,7 @@
<span class="k">return</span> <span class="n">opt_dict</span><span class="p">,</span> <span class="n">obj_value</span></div> <span class="k">return</span> <span class="n">opt_dict</span><span class="p">,</span> <span class="n">obj_value</span></div>
<div class="viewcode-block" id="LLEPE.update_xml"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.update_xml">[docs]</a> <span class="k">def</span> <span class="nf">update_xml</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <div class="viewcode-block" id="LLEPE.update_xml"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.update_xml">[docs]</a> <span class="k">def</span> <span class="nf">update_xml</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
<span class="n">info_dict</span><span class="p">,</span> <span class="n">info_dict</span><span class="p">,</span>
<span class="n">phases_xml_filename</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">phases_xml_filename</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">dependant_params_dict</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span> <span class="n">dependant_params_dict</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
@ -1373,7 +1374,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">set_phases</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_phases_xml_filename</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_phase_names</span><span class="p">)</span> <span class="bp">self</span><span class="o">.</span><span class="n">set_phases</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_phases_xml_filename</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_phase_names</span><span class="p">)</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.update_custom_objects_dict"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.update_custom_objects_dict">[docs]</a> <span class="k">def</span> <span class="nf">update_custom_objects_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">info_dict</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.update_custom_objects_dict"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.update_custom_objects_dict">[docs]</a> <span class="k">def</span> <span class="nf">update_custom_objects_dict</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">info_dict</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;</span> <span class="sd">&quot;&quot;&quot;</span>
<span class="sd"> updates internal custom_objects_dict with info_dict</span> <span class="sd"> updates internal custom_objects_dict with info_dict</span>
@ -1398,7 +1399,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_custom_objects_dict</span> <span class="o">=</span> <span class="n">custom_objects_dict</span> <span class="bp">self</span><span class="o">.</span><span class="n">_custom_objects_dict</span> <span class="o">=</span> <span class="n">custom_objects_dict</span>
<span class="k">return</span> <span class="kc">None</span></div> <span class="k">return</span> <span class="kc">None</span></div>
<div class="viewcode-block" id="LLEPE.parity_plot"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.parity_plot">[docs]</a> <span class="k">def</span> <span class="nf">parity_plot</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <div class="viewcode-block" id="LLEPE.parity_plot"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.parity_plot">[docs]</a> <span class="k">def</span> <span class="nf">parity_plot</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
<span class="n">compared_value</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">compared_value</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">c_data</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">c_data</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">c_label</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">c_label</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
@ -1544,7 +1545,7 @@
<span class="n">plt</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save_path</span><span class="p">,</span> <span class="n">bbox_inches</span><span class="o">=</span><span class="s1">&#39;tight&#39;</span><span class="p">)</span> <span class="n">plt</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save_path</span><span class="p">,</span> <span class="n">bbox_inches</span><span class="o">=</span><span class="s1">&#39;tight&#39;</span><span class="p">)</span>
<span class="k">return</span> <span class="n">fig</span><span class="p">,</span> <span class="n">ax</span></div> <span class="k">return</span> <span class="n">fig</span><span class="p">,</span> <span class="n">ax</span></div>
<div class="viewcode-block" id="LLEPE.r_squared"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.r_squared">[docs]</a> <span class="k">def</span> <span class="nf">r_squared</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">compared_value</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span> <div class="viewcode-block" id="LLEPE.r_squared"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.r_squared">[docs]</a> <span class="k">def</span> <span class="nf">r_squared</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">compared_value</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;r-squared value comparing measured and predicted compared value</span> <span class="sd">&quot;&quot;&quot;r-squared value comparing measured and predicted compared value</span>
<span class="sd"> Closer to 1, the better the model&#39;s predictions.</span> <span class="sd"> Closer to 1, the better the model&#39;s predictions.</span>
@ -1584,7 +1585,7 @@
<span class="n">r_2</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">num</span> <span class="o">/</span> <span class="n">den</span><span class="p">)</span> <span class="n">r_2</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">num</span> <span class="o">/</span> <span class="n">den</span><span class="p">)</span>
<span class="k">return</span> <span class="n">r_2</span></div> <span class="k">return</span> <span class="n">r_2</span></div>
<div class="viewcode-block" id="LLEPE.plot_3d_data"><a class="viewcode-back" href="../../modules/reeps.html#llepe.LLEPE.plot_3d_data">[docs]</a> <span class="nd">@staticmethod</span> <div class="viewcode-block" id="LLEPE.plot_3d_data"><a class="viewcode-back" href="../../modules/LLEPE.html#llepe.LLEPE.plot_3d_data">[docs]</a> <span class="nd">@staticmethod</span>
<span class="k">def</span> <span class="nf">plot_3d_data</span><span class="p">(</span><span class="n">x_data</span><span class="p">,</span> <span class="k">def</span> <span class="nf">plot_3d_data</span><span class="p">(</span><span class="n">x_data</span><span class="p">,</span>
<span class="n">y_data</span><span class="p">,</span> <span class="n">y_data</span><span class="p">,</span>
<span class="n">z_data</span><span class="p">,</span> <span class="n">z_data</span><span class="p">,</span>
@ -1646,7 +1647,7 @@
<div role="contentinfo"> <div role="contentinfo">
<p> <p>
&copy; Copyright 2020, Argonne National Laboratory &copy; Copyright 2020, UChicago Argonne, LLC.
</p> </p>
</div> </div>

61
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@ -0,0 +1,61 @@
.. _about:
************
About
************
Authors
=============
Titus Quah, University of Utah, <titus{dot}quah{at}gmail{dot}com>
Nwike Iloeje, Argonne National Laboratory, <ciloeje{at}anl{dot}gov>
Acknowledgements
================
Based upon work supported by funding from Argonne National Laboratory provided by the U.S. Department of Energy, Office of Energy Efficiency and Renewable Energy (EERE), under contract DE-AC02-06CH11357
References
==========
If you use LLEPE in your research , we kindly request that you cite the package as follows:
T. Quah and C. O. Iloeje, “Liquid--Liquid Extraction Thermodynamic Parameter Estimator (LLEPE) for Multicomponent Separation Systems,” in Materials Processing Fundamentals 2021, 2021, pp. 107–120, doi: https://doi.org/10.1007/978-3-030-65253-1_9.
License
=======
::
Copyright © 2020, UChicago Argonne, LLC
All Rights Reserved
Software Name: LLEPE
By: Argonne National Laboratory, University of Utah
OPEN SOURCE LICENSE
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
3. Neither the name of the copyright holder nor the names of its contributors
may be used to endorse or promote products derived from this software without
specific prior written permission.
******************************************************************************************************
DISCLAIMER
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY
OF SUCH DAMAGE.
***************************************************************************************************

6
docs/build/html/_sources/guide/install.rst.txt vendored
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@ -24,17 +24,17 @@ To install the latest master version:
.. code-block:: bash .. code-block:: bash
pip install git+https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git pip install git+https://github.com/ANL-CEEESA/LLEPE.git
Development version Development version
=================== ===================
To contribute to Stable-Baselines, with support for running tests and building the documentation. To contribute to LLEPE, with support for running tests and building the documentation.
.. code-block:: bash .. code-block:: bash
git clone https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git && cd parameter-estimation git clone https://github.com/ANL-CEEESA/LLEPE.git
pip install -e .[docs,tests] pip install -e .[docs,tests]

12
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@ -1,9 +1,8 @@
.. reeps documentation master file, created by Titus Quah .. LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
sphinx-quickstart on Tue Jun 9 10:13:23 2020. Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
You can adapt this file completely to your liking, but it should at least Released under the modified BSD license. See LICENSE for more details.
contain the root `toctree` directive.
Welcome to llepe's docs! - the Liquid-Liquid Extraction Parameter Estimator Welcome to LLEPE's docs! - the Liquid-Liquid Extraction Parameter Estimator
=========================================================================== ===========================================================================
LLEPE is a package for thermodynamic parameter estimation for liquid-liquid extraction modeling LLEPE is a package for thermodynamic parameter estimation for liquid-liquid extraction modeling
@ -19,12 +18,13 @@ Error between predicted and experimental data is then minimized.
guide/install guide/install
guide/quickstart guide/quickstart
guide/about
.. toctree:: .. toctree::
:maxdepth: 1 :maxdepth: 1
:caption: Searchers :caption: Searchers
modules/reeps modules/LLEPE

2
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@ -1,4 +1,4 @@
.. _reeps: .. _LLEPE:
.. automodule:: llepe .. automodule:: llepe

2
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@ -1,4 +1,4 @@
.. _reeps: .. _LLEPE:
.. automodule:: llepe .. automodule:: llepe

103
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@ -86,10 +86,11 @@
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="guide/install.html">Installation</a></li> <li class="toctree-l1"><a class="reference internal" href="guide/install.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="guide/quickstart.html">Getting Started</a></li> <li class="toctree-l1"><a class="reference internal" href="guide/quickstart.html">Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="guide/about.html">About</a></li>
</ul> </ul>
<p class="caption"><span class="caption-text">Searchers</span></p> <p class="caption"><span class="caption-text">Searchers</span></p>
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="modules/reeps.html">LLEPE</a></li> <li class="toctree-l1"><a class="reference internal" href="modules/LLEPE.html">LLEPE</a></li>
</ul> </ul>
@ -169,7 +170,7 @@
<h2 id="F">F</h2> <h2 id="F">F</h2>
<table style="width: 100%" class="indextable genindextable"><tr> <table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE.fit">fit() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.fit">fit() (llepe.LLEPE method)</a>
</li> </li>
</ul></td> </ul></td>
</tr></table> </tr></table>
@ -177,45 +178,45 @@
<h2 id="G">G</h2> <h2 id="G">G</h2>
<table style="width: 100%" class="indextable genindextable"><tr> <table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE.get_aq_solvent_name">get_aq_solvent_name() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_aq_solvent_name">get_aq_solvent_name() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_aq_solvent_rho">get_aq_solvent_rho() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_aq_solvent_rho">get_aq_solvent_rho() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_complex_names">get_complex_names() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_complex_names">get_complex_names() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_custom_objects_dict">get_custom_objects_dict() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_custom_objects_dict">get_custom_objects_dict() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_dependant_params_dict">get_dependant_params_dict() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_dependant_params_dict">get_dependant_params_dict() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_diluant_name">get_diluant_name() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_diluant_name">get_diluant_name() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_diluant_rho">get_diluant_rho() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_diluant_rho">get_diluant_rho() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_exp_df">get_exp_df() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_exp_df">get_exp_df() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_extractant_name">get_extractant_name() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_extractant_name">get_extractant_name() (llepe.LLEPE method)</a>
</li> </li>
</ul></td> </ul></td>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE.get_extractant_rho">get_extractant_rho() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_extractant_rho">get_extractant_rho() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_extracted_species_ion_names">get_extracted_species_ion_names() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_extracted_species_ion_names">get_extracted_species_ion_names() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_extracted_species_list">get_extracted_species_list() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_extracted_species_list">get_extracted_species_list() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_in_moles">get_in_moles() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_in_moles">get_in_moles() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_objective_function">get_objective_function() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_objective_function">get_objective_function() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_opt_dict">get_opt_dict() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_opt_dict">get_opt_dict() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_optimizer">get_optimizer() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_optimizer">get_optimizer() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_phases">get_phases() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_phases">get_phases() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_predicted_dict">get_predicted_dict() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_predicted_dict">get_predicted_dict() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.get_temp_xml_file_path">get_temp_xml_file_path() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.get_temp_xml_file_path">get_temp_xml_file_path() (llepe.LLEPE method)</a>
</li> </li>
</ul></td> </ul></td>
</tr></table> </tr></table>
@ -227,14 +228,14 @@
llepe llepe
<ul> <ul>
<li><a href="modules/reeps.html#module-llepe">module</a> <li><a href="modules/LLEPE.html#module-llepe">module</a>
</li> </li>
</ul></li> </ul></li>
</ul></td> </ul></td>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE">LLEPE (class in llepe)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE">LLEPE (class in llepe)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.log_mean_squared_error">log_mean_squared_error() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.log_mean_squared_error">log_mean_squared_error() (llepe.LLEPE method)</a>
</li> </li>
</ul></td> </ul></td>
</tr></table> </tr></table>
@ -246,7 +247,7 @@
module module
<ul> <ul>
<li><a href="modules/reeps.html#module-llepe">llepe</a> <li><a href="modules/LLEPE.html#module-llepe">llepe</a>
</li> </li>
</ul></li> </ul></li>
</ul></td> </ul></td>
@ -255,11 +256,11 @@
<h2 id="P">P</h2> <h2 id="P">P</h2>
<table style="width: 100%" class="indextable genindextable"><tr> <table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE.parity_plot">parity_plot() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.parity_plot">parity_plot() (llepe.LLEPE method)</a>
</li> </li>
</ul></td> </ul></td>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE.plot_3d_data">plot_3d_data() (llepe.LLEPE static method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.plot_3d_data">plot_3d_data() (llepe.LLEPE static method)</a>
</li> </li>
</ul></td> </ul></td>
</tr></table> </tr></table>
@ -267,7 +268,7 @@
<h2 id="R">R</h2> <h2 id="R">R</h2>
<table style="width: 100%" class="indextable genindextable"><tr> <table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE.r_squared">r_squared() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.r_squared">r_squared() (llepe.LLEPE method)</a>
</li> </li>
</ul></td> </ul></td>
</tr></table> </tr></table>
@ -275,45 +276,45 @@
<h2 id="S">S</h2> <h2 id="S">S</h2>
<table style="width: 100%" class="indextable genindextable"><tr> <table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE.scipy_minimize">scipy_minimize() (llepe.LLEPE static method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.scipy_minimize">scipy_minimize() (llepe.LLEPE static method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_aq_solvent_name">set_aq_solvent_name() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_aq_solvent_name">set_aq_solvent_name() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_aq_solvent_rho">set_aq_solvent_rho() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_aq_solvent_rho">set_aq_solvent_rho() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_complex_names">set_complex_names() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_complex_names">set_complex_names() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_custom_objects_dict">set_custom_objects_dict() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_custom_objects_dict">set_custom_objects_dict() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_dependant_params_dict">set_dependant_params_dict() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_dependant_params_dict">set_dependant_params_dict() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_diluant_name">set_diluant_name() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_diluant_name">set_diluant_name() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_diluant_rho">set_diluant_rho() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_diluant_rho">set_diluant_rho() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_exp_df">set_exp_df() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_exp_df">set_exp_df() (llepe.LLEPE method)</a>
</li> </li>
</ul></td> </ul></td>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE.set_extractant_name">set_extractant_name() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_extractant_name">set_extractant_name() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_extractant_rho">set_extractant_rho() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_extractant_rho">set_extractant_rho() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_extracted_species_ion_names">set_extracted_species_ion_names() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_extracted_species_ion_names">set_extracted_species_ion_names() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_extracted_species_list">set_extracted_species_list() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_extracted_species_list">set_extracted_species_list() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_in_moles">set_in_moles() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_in_moles">set_in_moles() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_objective_function">set_objective_function() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_objective_function">set_objective_function() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_opt_dict">set_opt_dict() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_opt_dict">set_opt_dict() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_optimizer">set_optimizer() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_optimizer">set_optimizer() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_phases">set_phases() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_phases">set_phases() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.set_temp_xml_file_path">set_temp_xml_file_path() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.set_temp_xml_file_path">set_temp_xml_file_path() (llepe.LLEPE method)</a>
</li> </li>
</ul></td> </ul></td>
</tr></table> </tr></table>
@ -321,13 +322,13 @@
<h2 id="U">U</h2> <h2 id="U">U</h2>
<table style="width: 100%" class="indextable genindextable"><tr> <table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE.update_custom_objects_dict">update_custom_objects_dict() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.update_custom_objects_dict">update_custom_objects_dict() (llepe.LLEPE method)</a>
</li> </li>
</ul></td> </ul></td>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="modules/reeps.html#llepe.LLEPE.update_predicted_dict">update_predicted_dict() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.update_predicted_dict">update_predicted_dict() (llepe.LLEPE method)</a>
</li> </li>
<li><a href="modules/reeps.html#llepe.LLEPE.update_xml">update_xml() (llepe.LLEPE method)</a> <li><a href="modules/LLEPE.html#llepe.LLEPE.update_xml">update_xml() (llepe.LLEPE method)</a>
</li> </li>
</ul></td> </ul></td>
</tr></table> </tr></table>
@ -344,7 +345,7 @@
<div role="contentinfo"> <div role="contentinfo">
<p> <p>
&copy; Copyright 2020, Argonne National Laboratory &copy; Copyright 2020, UChicago Argonne, LLC.
</p> </p>
</div> </div>

272
docs/build/html/guide/about.html vendored
Unescape View File

@ -0,0 +1,272 @@
<!DOCTYPE html>
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<span id="id1"></span><h1>About<a class="headerlink" href="#about" title="Permalink to this headline"></a></h1>
<div class="section" id="authors">
<h2>Authors<a class="headerlink" href="#authors" title="Permalink to this headline"></a></h2>
<p>Titus Quah, University of Utah, &lt;titus{dot}quah{at}gmail{dot}com&gt;</p>
<p>Nwike Iloeje, Argonne National Laboratory, &lt;ciloeje{at}anl{dot}gov&gt;</p>
</div>
<div class="section" id="acknowledgements">
<h2>Acknowledgements<a class="headerlink" href="#acknowledgements" title="Permalink to this headline"></a></h2>
<p>Based upon work supported by funding from Argonne National Laboratory provided by the U.S. Department of Energy, Office of Energy Efficiency and Renewable Energy (EERE), under contract DE-AC02-06CH11357</p>
</div>
<div class="section" id="references">
<h2>References<a class="headerlink" href="#references" title="Permalink to this headline"></a></h2>
<p>If you use LLEPE in your research , we kindly request that you cite the package as follows:</p>
<ol class="upperalpha simple" start="20">
<li><p>Quah and C. O. Iloeje, “Liquid--Liquid Extraction Thermodynamic Parameter Estimator (LLEPE) for Multicomponent Separation Systems,” in Materials Processing Fundamentals 2021, 2021, pp. 107–120, doi: <a class="reference external" href="https://doi.org/10.1007/978-3-030-65253-1_9">https://doi.org/10.1007/978-3-030-65253-1_9</a>.</p></li>
</ol>
</div>
<div class="section" id="license">
<h2>License<a class="headerlink" href="#license" title="Permalink to this headline"></a></h2>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>Copyright © 2020, UChicago Argonne, LLC
All Rights Reserved
Software Name: LLEPE
By: Argonne National Laboratory, University of Utah
OPEN SOURCE LICENSE
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
3. Neither the name of the copyright holder nor the names of its contributors
may be used to endorse or promote products derived from this software without
specific prior written permission.
******************************************************************************************************
DISCLAIMER
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY
OF SUCH DAMAGE.
***************************************************************************************************
</pre></div>
</div>
</div>
</div>
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</div>
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@ -36,7 +36,7 @@
<link rel="index" title="Index" href="../genindex.html" /> <link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" /> <link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Getting Started" href="quickstart.html" /> <link rel="next" title="Getting Started" href="quickstart.html" />
<link rel="prev" title="Welcome to llepe&#39;s docs! - the Liquid-Liquid Extraction Parameter Estimator" href="../index.html" /> <link rel="prev" title="Welcome to LLEPE&#39;s docs! - the Liquid-Liquid Extraction Parameter Estimator" href="../index.html" />
</head> </head>
<body class="wy-body-for-nav"> <body class="wy-body-for-nav">
@ -97,7 +97,7 @@
</ul> </ul>
<p class="caption"><span class="caption-text">Searchers</span></p> <p class="caption"><span class="caption-text">Searchers</span></p>
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="../modules/reeps.html">LLEPE</a></li> <li class="toctree-l1"><a class="reference internal" href="../modules/LLEPE.html">LLEPE</a></li>
</ul> </ul>
@ -175,14 +175,14 @@
<div class="section" id="bleeding-edge-version"> <div class="section" id="bleeding-edge-version">
<h2>Bleeding-edge version<a class="headerlink" href="#bleeding-edge-version" title="Permalink to this headline"></a></h2> <h2>Bleeding-edge version<a class="headerlink" href="#bleeding-edge-version" title="Permalink to this headline"></a></h2>
<p>To install the latest master version:</p> <p>To install the latest master version:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip install git+https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip install git+https://github.com/ANL-CEEESA/LLEPE.git
</pre></div> </pre></div>
</div> </div>
</div> </div>
<div class="section" id="development-version"> <div class="section" id="development-version">
<h2>Development version<a class="headerlink" href="#development-version" title="Permalink to this headline"></a></h2> <h2>Development version<a class="headerlink" href="#development-version" title="Permalink to this headline"></a></h2>
<p>To contribute to Stable-Baselines, with support for running tests and building the documentation.</p> <p>To contribute to LLEPE, with support for running tests and building the documentation.</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git clone https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git <span class="o">&amp;&amp;</span> <span class="nb">cd</span> parameter-estimation <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git clone https://github.com/ANL-CEEESA/LLEPE.git
pip install -e .<span class="o">[</span>docs,tests<span class="o">]</span> pip install -e .<span class="o">[</span>docs,tests<span class="o">]</span>
</pre></div> </pre></div>
</div> </div>
@ -204,7 +204,7 @@ pip install -e .<span class="o">[</span>docs,tests<span class="o">]</span>
<a href="quickstart.html" class="btn btn-neutral float-right" title="Getting Started" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> <a href="quickstart.html" class="btn btn-neutral float-right" title="Getting Started" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
<a href="../index.html" class="btn btn-neutral float-left" title="Welcome to llepe&#39;s docs! - the Liquid-Liquid Extraction Parameter Estimator" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> <a href="../index.html" class="btn btn-neutral float-left" title="Welcome to LLEPE&#39;s docs! - the Liquid-Liquid Extraction Parameter Estimator" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
</div> </div>
@ -213,7 +213,7 @@ pip install -e .<span class="o">[</span>docs,tests<span class="o">]</span>
<div role="contentinfo"> <div role="contentinfo">
<p> <p>
&copy; Copyright 2020, Argonne National Laboratory &copy; Copyright 2020, UChicago Argonne, LLC.
</p> </p>
</div> </div>

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@ -218,7 +218,7 @@ aqueous phase.</p>
<div role="contentinfo"> <div role="contentinfo">
<p> <p>
&copy; Copyright 2020, Argonne National Laboratory &copy; Copyright 2020, UChicago Argonne, LLC.
</p> </p>
</div> </div>

20
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Welcome to llepe&#39;s docs! - the Liquid-Liquid Extraction Parameter Estimator &mdash; LLEPE 1.0.0 documentation</title> <title>Welcome to LLEPE&#39;s docs! - the Liquid-Liquid Extraction Parameter Estimator &mdash; LLEPE 1.0.0 documentation</title>
@ -86,10 +86,11 @@
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="guide/install.html">Installation</a></li> <li class="toctree-l1"><a class="reference internal" href="guide/install.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="guide/quickstart.html">Getting Started</a></li> <li class="toctree-l1"><a class="reference internal" href="guide/quickstart.html">Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="guide/about.html">About</a></li>
</ul> </ul>
<p class="caption"><span class="caption-text">Searchers</span></p> <p class="caption"><span class="caption-text">Searchers</span></p>
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="modules/reeps.html">LLEPE</a></li> <li class="toctree-l1"><a class="reference internal" href="modules/LLEPE.html">LLEPE</a></li>
</ul> </ul>
@ -135,7 +136,7 @@
<li><a href="#">Docs</a> &raquo;</li> <li><a href="#">Docs</a> &raquo;</li>
<li>Welcome to llepe's docs! - the Liquid-Liquid Extraction Parameter Estimator</li> <li>Welcome to LLEPE's docs! - the Liquid-Liquid Extraction Parameter Estimator</li>
<li class="wy-breadcrumbs-aside"> <li class="wy-breadcrumbs-aside">
@ -155,7 +156,7 @@
<div itemprop="articleBody"> <div itemprop="articleBody">
<div class="section" id="welcome-to-llepe-s-docs-the-liquid-liquid-extraction-parameter-estimator"> <div class="section" id="welcome-to-llepe-s-docs-the-liquid-liquid-extraction-parameter-estimator">
<h1>Welcome to llepe's docs! - the Liquid-Liquid Extraction Parameter Estimator<a class="headerlink" href="#welcome-to-llepe-s-docs-the-liquid-liquid-extraction-parameter-estimator" title="Permalink to this headline"></a></h1> <h1>Welcome to LLEPE's docs! - the Liquid-Liquid Extraction Parameter Estimator<a class="headerlink" href="#welcome-to-llepe-s-docs-the-liquid-liquid-extraction-parameter-estimator" title="Permalink to this headline"></a></h1>
<p>LLEPE is a package for thermodynamic parameter estimation for liquid-liquid extraction modeling</p> <p>LLEPE is a package for thermodynamic parameter estimation for liquid-liquid extraction modeling</p>
<p>LLEPE takes experimental data in a csv and system data in a xml.</p> <p>LLEPE takes experimental data in a csv and system data in a xml.</p>
<p>The package then uses Cantera, another python package, to simulate equilibrium.</p> <p>The package then uses Cantera, another python package, to simulate equilibrium.</p>
@ -172,12 +173,19 @@
</ul> </ul>
</li> </li>
<li class="toctree-l1"><a class="reference internal" href="guide/quickstart.html">Getting Started</a></li> <li class="toctree-l1"><a class="reference internal" href="guide/quickstart.html">Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="guide/about.html">About</a><ul>
<li class="toctree-l2"><a class="reference internal" href="guide/about.html#authors">Authors</a></li>
<li class="toctree-l2"><a class="reference internal" href="guide/about.html#acknowledgements">Acknowledgements</a></li>
<li class="toctree-l2"><a class="reference internal" href="guide/about.html#references">References</a></li>
<li class="toctree-l2"><a class="reference internal" href="guide/about.html#license">License</a></li>
</ul>
</li>
</ul> </ul>
</div> </div>
<div class="toctree-wrapper compound"> <div class="toctree-wrapper compound">
<p class="caption"><span class="caption-text">Searchers</span></p> <p class="caption"><span class="caption-text">Searchers</span></p>
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="modules/reeps.html">LLEPE</a></li> <li class="toctree-l1"><a class="reference internal" href="modules/LLEPE.html">LLEPE</a></li>
</ul> </ul>
</div> </div>
</div> </div>
@ -208,7 +216,7 @@
<div role="contentinfo"> <div role="contentinfo">
<p> <p>
&copy; Copyright 2020, Argonne National Laboratory &copy; Copyright 2020, UChicago Argonne, LLC.
</p> </p>
</div> </div>

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@ -34,8 +34,7 @@
<link rel="stylesheet" href="../_static/css/theme.css" type="text/css" /> <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
<link rel="stylesheet" href="../_static/pygments.css" type="text/css" /> <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
<link rel="index" title="Index" href="../genindex.html" /> <link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" /> <link rel="search" title="Search" href="../search.html" />
<link rel="prev" title="Getting Started" href="../guide/quickstart.html" />
</head> </head>
<body class="wy-body-for-nav"> <body class="wy-body-for-nav">
@ -87,13 +86,6 @@
<li class="toctree-l1"><a class="reference internal" href="../guide/install.html">Installation</a></li> <li class="toctree-l1"><a class="reference internal" href="../guide/install.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="../guide/quickstart.html">Getting Started</a></li> <li class="toctree-l1"><a class="reference internal" href="../guide/quickstart.html">Getting Started</a></li>
</ul> </ul>
<p class="caption"><span class="caption-text">Searchers</span></p>
<ul class="current">
<li class="toctree-l1 current"><a class="current reference internal" href="#">LLEPE</a><ul>
<li class="toctree-l2"><a class="reference internal" href="#parameters">Parameters</a></li>
</ul>
</li>
</ul>
@ -157,8 +149,8 @@
<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article"> <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
<div itemprop="articleBody"> <div itemprop="articleBody">
<span class="target" id="module-llepe"><span id="reeps"></span></span><div class="section" id="llepe"> <span class="target" id="module-llepe"><span id="llepe"></span></span><div class="section" id="id1">
<h1>LLEPE<a class="headerlink" href="#llepe" title="Permalink to this headline"></a></h1> <h1>LLEPE<a class="headerlink" href="#id1" title="Permalink to this headline"></a></h1>
<div class="section" id="parameters"> <div class="section" id="parameters">
<h2>Parameters<a class="headerlink" href="#parameters" title="Permalink to this headline"></a></h2> <h2>Parameters<a class="headerlink" href="#parameters" title="Permalink to this headline"></a></h2>
<dl class="py class"> <dl class="py class">
@ -1079,19 +1071,12 @@ about parameters dependant on info_dict</p></li>
</div> </div>
<footer> <footer>
<div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
<a href="../guide/quickstart.html" class="btn btn-neutral float-left" title="Getting Started" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
</div>
<hr/> <hr/>
<div role="contentinfo"> <div role="contentinfo">
<p> <p>
&copy; Copyright 2020, Argonne National Laboratory &copy; Copyright 2020, UChicago Argonne, LLC.
</p> </p>
</div> </div>

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@ -92,10 +92,11 @@
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="guide/install.html">Installation</a></li> <li class="toctree-l1"><a class="reference internal" href="guide/install.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="guide/quickstart.html">Getting Started</a></li> <li class="toctree-l1"><a class="reference internal" href="guide/quickstart.html">Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="guide/about.html">About</a></li>
</ul> </ul>
<p class="caption"><span class="caption-text">Searchers</span></p> <p class="caption"><span class="caption-text">Searchers</span></p>
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="modules/reeps.html">LLEPE</a></li> <li class="toctree-l1"><a class="reference internal" href="modules/LLEPE.html">LLEPE</a></li>
</ul> </ul>
@ -170,7 +171,7 @@
<tr> <tr>
<td></td> <td></td>
<td> <td>
<a href="modules/reeps.html#module-llepe"><code class="xref">llepe</code></a></td><td> <a href="modules/LLEPE.html#module-llepe"><code class="xref">llepe</code></a></td><td>
<em></em></td></tr> <em></em></td></tr>
</table> </table>
@ -185,7 +186,7 @@
<div role="contentinfo"> <div role="contentinfo">
<p> <p>
&copy; Copyright 2020, Argonne National Laboratory &copy; Copyright 2020, UChicago Argonne, LLC.
</p> </p>
</div> </div>

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@ -86,10 +86,11 @@
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="guide/install.html">Installation</a></li> <li class="toctree-l1"><a class="reference internal" href="guide/install.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="guide/quickstart.html">Getting Started</a></li> <li class="toctree-l1"><a class="reference internal" href="guide/quickstart.html">Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="guide/about.html">About</a></li>
</ul> </ul>
<p class="caption"><span class="caption-text">Searchers</span></p> <p class="caption"><span class="caption-text">Searchers</span></p>
<ul> <ul>
<li class="toctree-l1"><a class="reference internal" href="modules/reeps.html">LLEPE</a></li> <li class="toctree-l1"><a class="reference internal" href="modules/LLEPE.html">LLEPE</a></li>
</ul> </ul>
@ -176,7 +177,7 @@
<div role="contentinfo"> <div role="contentinfo">
<p> <p>
&copy; Copyright 2020, Argonne National Laboratory &copy; Copyright 2020, UChicago Argonne, LLC.
</p> </p>
</div> </div>

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@ -1,3 +1,7 @@
# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
# Configuration file for the Sphinx documentation builder. # Configuration file for the Sphinx documentation builder.
# #
# This file only contains a selection of the most common options. For a full # This file only contains a selection of the most common options. For a full
@ -18,8 +22,8 @@ sys.path.insert(0, os.path.abspath('../'))
# -- Project information ----------------------------------------------------- # -- Project information -----------------------------------------------------
project = 'LLEPE' project = 'LLEPE'
copyright = '2020, Argonne National Laboratory' copyright = '2020, UChicago Argonne, LLC.'
author = 'Argonne National Laboratory' author = 'UChicago Argonne, LLC.'
master_doc = 'index' master_doc = 'index'
autodoc_mock_imports = ["cantera"] autodoc_mock_imports = ["cantera"]

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@ -1,9 +1,8 @@
.. reeps documentation master file, created by Titus Quah .. LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
sphinx-quickstart on Tue Jun 9 10:13:23 2020. Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
You can adapt this file completely to your liking, but it should at least Released under the modified BSD license. See LICENSE for more details.
contain the root `toctree` directive.
Welcome to llepe's docs! - the Liquid-Liquid Extraction Parameter Estimator Welcome to LLEPE's docs! - the Liquid-Liquid Extraction Parameter Estimator
=========================================================================== ===========================================================================
LLEPE is a package for thermodynamic parameter estimation for liquid-liquid extraction modeling LLEPE is a package for thermodynamic parameter estimation for liquid-liquid extraction modeling
@ -19,12 +18,13 @@ Error between predicted and experimental data is then minimized.
guide/install guide/install
guide/quickstart guide/quickstart
guide/about
.. toctree:: .. toctree::
:maxdepth: 1 :maxdepth: 1
:caption: Estimators :caption: Estimators
modules/reeps modules/LLEPE

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@ -1,3 +1,6 @@
# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
# Configuration file for the Sphinx documentation builder. # Configuration file for the Sphinx documentation builder.
# #
# This file only contains a selection of the most common options. For a full # This file only contains a selection of the most common options. For a full
@ -18,8 +21,8 @@ sys.path.insert(0, os.path.abspath('../../'))
# -- Project information ----------------------------------------------------- # -- Project information -----------------------------------------------------
project = 'LLEPE' project = 'LLEPE'
copyright = '2020, Argonne National Laboratory' copyright = '2020, UChicago Argonne, LLC.'
author = 'Argonne National Laboratory' author = 'UChicago Argonne, LLC.'
master_doc = 'index' master_doc = 'index'
# The full version, including alpha/beta/rc tags # The full version, including alpha/beta/rc tags

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@ -0,0 +1,61 @@
.. _about:
************
About
************
Authors
=============
Titus Quah, University of Utah, <titus{dot}quah{at}gmail{dot}com>
Nwike Iloeje, Argonne National Laboratory, <ciloeje{at}anl{dot}gov>
Acknowledgements
================
Based upon work supported by funding from Argonne National Laboratory provided by the U.S. Department of Energy, Office of Energy Efficiency and Renewable Energy (EERE), under contract DE-AC02-06CH11357
References
==========
If you use LLEPE in your research , we kindly request that you cite the package as follows:
T. Quah and C. O. Iloeje, “Liquid--Liquid Extraction Thermodynamic Parameter Estimator (LLEPE) for Multicomponent Separation Systems,” in Materials Processing Fundamentals 2021, 2021, pp. 107–120, doi: https://doi.org/10.1007/978-3-030-65253-1_9.
License
=======
::
Copyright © 2020, UChicago Argonne, LLC
All Rights Reserved
Software Name: LLEPE
By: Argonne National Laboratory, University of Utah
OPEN SOURCE LICENSE
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
3. Neither the name of the copyright holder nor the names of its contributors
may be used to endorse or promote products derived from this software without
specific prior written permission.
******************************************************************************************************
DISCLAIMER
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY
OF SUCH DAMAGE.
***************************************************************************************************

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@ -24,17 +24,17 @@ To install the latest master version:
.. code-block:: bash .. code-block:: bash
pip install git+https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git pip install git+https://github.com/ANL-CEEESA/LLEPE.git
Development version Development version
=================== ===================
To contribute to Stable-Baselines, with support for running tests and building the documentation. To contribute to LLEPE, with support for running tests and building the documentation.
.. code-block:: bash .. code-block:: bash
git clone https://xgitlab.cels.anl.gov/summer-2020/parameter-estimation.git && cd parameter-estimation git clone https://github.com/ANL-CEEESA/LLEPE.git
pip install -e .[docs,tests] pip install -e .[docs,tests]

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@ -1,9 +1,8 @@
.. reeps documentation master file, created by Titus Quah .. LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
sphinx-quickstart on Tue Jun 9 10:13:23 2020. Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
You can adapt this file completely to your liking, but it should at least Released under the modified BSD license. See LICENSE for more details.
contain the root `toctree` directive.
Welcome to llepe's docs! - the Liquid-Liquid Extraction Parameter Estimator Welcome to LLEPE's docs! - the Liquid-Liquid Extraction Parameter Estimator
=========================================================================== ===========================================================================
LLEPE is a package for thermodynamic parameter estimation for liquid-liquid extraction modeling LLEPE is a package for thermodynamic parameter estimation for liquid-liquid extraction modeling
@ -19,12 +18,13 @@ Error between predicted and experimental data is then minimized.
guide/install guide/install
guide/quickstart guide/quickstart
guide/about
.. toctree:: .. toctree::
:maxdepth: 1 :maxdepth: 1
:caption: Searchers :caption: Searchers
modules/reeps modules/LLEPE

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docs/source/modules/LLEPE.rst
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.. _LLEPE:
.. automodule:: llepe
LLEPE
=====
Parameters
----------
.. autoclass:: LLEPE
:members:
:inherited-members:

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llepe/__init__.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
from .llepe import LLEPE from .llepe import LLEPE
from .utils import get_xml_value, set_size from .utils import get_xml_value, set_size
from .optimizers import * from .optimizers import *

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llepe/llepe.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
from datetime import datetime from datetime import datetime
import cantera as ct import cantera as ct
import pandas as pd import pandas as pd

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llepe/objectives.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
import numpy as np import numpy as np
import pandas as pd import pandas as pd

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llepe/optimizers.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
import scipy.optimize as scipy_opt import scipy.optimize as scipy_opt
from scipy.optimize import minimize from scipy.optimize import minimize

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llepe/utils.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
import xml.etree.ElementTree as ET import xml.etree.ElementTree as ET
import matplotlib.pyplot as plt import matplotlib.pyplot as plt

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setup.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
from setuptools import setup from setuptools import setup
setup( setup(
@ -12,8 +16,8 @@ setup(
include_package_data=True, include_package_data=True,
zip_safe=False, zip_safe=False,
url='', url='',
license='', license='modified BSD license',
author='Titus Quah', author='UChicago Argonne, LLC.',
author_email='', author_email='',
description='Liquid-liquid extraction parameter searcher', description='Liquid-liquid extraction parameter searcher',
install_requires=['cantera==2.4.0', install_requires=['cantera==2.4.0',

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tests/__init__.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.

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tests/data_gen.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
from llepe import LLEPE from llepe import LLEPE
import json import json

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tests/test_reeps.py
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# LLEPE: Liquid-Liquid Equilibrium Parameter Estimator
# Copyright (C) 2020, UChicago Argonne, LLC. All rights reserved.
# Released under the modified BSD license. See LICENSE for more details.
import json import json
from llepe import LLEPE from llepe import LLEPE
import pkg_resources import pkg_resources

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